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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaaccacaataaccataaattctctcatactgcttgattgttctaattattagagttgatgtatcatcctgttgcttcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00410.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G06420.2 (Glycine max), 5'ss of exon 2
TGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaacca--caataaccataaa-ttctctcatactgcttgattgttctaattatt---agagttgatgtatcatcctgttgcttcag---------
|||| ||||||| || || |||||||| |||||  ||||||| ||||||||||| |||||||| ||||||| ||| ||||||||||||| |     ||||| |    ||||   ||  |  ||  ||  || |||| |    || |||  |   |     || ||  |            
TGTGGAATACAACGTTTCCTATGTGTACCATTCCTTGTTTGCGTACTTCGACAGAGACAACATAGCTCTCAAGGGACTTGCCAAgtaactaactcctaaccttttgcttcttctatttttgttattttatcaaattctcgaaagggttattaatttcatgtgctgtcttgtggagaacag

upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G19060.1 (Glycine max), 5'ss of exon 2
TGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaaccacaataaccataaattctctcatactgcttgattgttctaattattagagttgatgtatcatcc--tgttgcttcag-------
|||| |||||||||  || |||| ||| || ||  ||||||||||||| |||||||||||| | ||||||| |||  ||||||||||||||  | ||  |    ||  |||  | || ||  |   | |    | | |  ||    | |||| |  ||||  |   |       
TGTGGAATACAATGCTTCCTATGCGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAAgtaaccaacacaaa-acccctttcctctaaatgtttattctgtttctcaaatgggttttcaatttcatgcgctgttattgttgaaaacag

upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G43650.1 (Glycine max), 5'ss of exon 2
TGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaacca---caataaccataaattctctcatactgcttgattgttctaattattagagttgatgtatcatcctgt-tgcttcag-------------
|||| |||||||||  || || ||||| || ||  ||||||||||||| |||||||||||| | ||||||| |||  |||||||||||| |   ||| | || | |   ||||           |||  |   |||  |  |   ||| |   ||    | ||||                 
TGTGGAATACAATGCTTCCTACGTGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAAgtaactaactcaaaaccccttatgcctctttcctcttaatatttcttctatttctcaaacggattttcaatttcatgtgctgttattgttgaaaacag

upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G31300.1 (Glycine max), 5'ss of exon 2
TGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaacca--caataaccata--aattctctcatactgcttgattgttctaattatt---agagttgatgtatcatcctgttgcttcag---------
|||| ||||||| || || |||||||| ||  |  ||||||| ||||||||||| |||||||| |||||||  || ||||| ||||||| |     ||||| |   | |||| | ||  |  ||  ||  |||| || |    || |||   |  |     || || ||            
TGTGGAATACAACGTTTCCTATGTGTACCACGCCTTGTTTGCGTACTTCGACAGAGACAACATAGCTCTCAAAGGACTTGCAAAgtaactaacttctaacccttttacttcttttatctttgttatttcgtctatttctctaaagggttttcgatttcgtgtggtgttttgtggagaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359752|gb|EC921829.1|EC921829
EST:     ATGTTTGCATACTTCGACAGGGACAACATTGCTCTCAGGGGCCTTGCCAA                         ATTCTTCAAGGAGTCAAGTGAAGAAGAAAGACAGCATGCTGAGAAACTGAT
genomic: ATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaaccacaa ... gttgcttcagATTCTTCAAGGAGTCGAGTGAAGAAGAAAGACAGCATGCTGAGAAGCTGAT
EST: gi|26267152|gb|CA818215.1|CA818215
EST:     ATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA                         ACTCTTCAAGGAGTCAAGTGAAGAAGAAAGACAGCATGCTGAGAAGCTGAT
genomic: ATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAAgtaaccacaa ... gttgcttcagATTCTTCAAGGAGTCGAGTGAAGAAGAAAGACAGCATGCTGAGAAGCTGAT