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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCACACAGCTCAGCCATAATGTAGCAAAGTTCAGATTTGATCTTCCTACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttggttgagttggttctgtcgtgtttgctctatgatcaaactcggtctaaatcctatctttttaattcttagttcttgtttacatagcattttc...

Basic information

species Vitis vinifera
transcript Vv08s0056g01150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 2
AGCGCACACAGCTCAGCCATAATGTAGCAAAGTTCAGATTTGATCTTCCTACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttggttgagttggttctgtcgtgtttgctctatgatcaaactcggtctaaatcctatctttttaattcttagttcttgtttacatagcattttc----
||||  ||||||| ||||||||||| || ||||||| |||||  ||||| || || ||||| || ||||| || |||||||| ||||| |||||||||| || | ||||  |||  |  || | | || | || | |       || |   |        | | | |||| ||  ||||   ||   |  | |   | |     
AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgcctga--tatttttcttgtttctgttttccttgtcaatttaattagttcattttgtgtttagtt--tagtatctgcaaaatttgttctcttaatg

upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 2
AGCGCACACAGCTCAGCCATAATGTAGCAAAGTTCAGATTTGATCTTCCTACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttggttgag---ttggttctgtcgtgtttgctctatgatcaaactcggtctaaatcctatctttttaattcttagttcttgtttacatagcattttc-
||||  ||||||| ||||||||||| |||||||||| |||||  || || || || ||||| || ||||| || |||||||| ||||| |||||||||| || |  |||  |||    ||| || |||| | ||| |  | | |    | || ||  |  || ||| ||||   || | | ||  | | | || |   ||||| 
AGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgcctgatcttttgcttgtgtc-tattttccttgtcaatgtaatcagttca--tcatattttttgtgtt-taatttagtatatgcaaatttttttct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406972|gb|CF212599.1|CF212599
EST:     ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAA                         GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
genomic: ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttgg ... tctcaaacagGGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
EST: gi|351024116|gb|FQ423539.1|FQ423539
EST:     ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAA                         GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAGCCATATACCCCAACTAC
genomic: ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttgg ... tctcaaacagGGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
EST: gi|110397391|gb|EC963126.1|EC963126
EST:     CCCAATTTGACAACATATAAGTTGCAA                         GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
genomic: CCCAATTGGACAACATATAAGTTGCAAgtacggttgg ... tctcaaacagGGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
EST: gi|33406880|gb|CF212507.1|CF212507
EST:     ATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAA                         GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
genomic: ATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttgg ... tctcaaacagGGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC
EST: gi|294965698|gb|GW839153.1|GW839153
EST:     ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAA                         GGGTAAGGATGGTGAGGGTCAAG
genomic: ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttgg ... tctcaaacagGGGTAAGGATGGTGAGGGTCAAG
EST: gi|351015566|gb|FQ426808.1|FQ426808
EST:     ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAA                         GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAGCCATATACCCCAACTAC
genomic: ACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttgg ... tctcaaacagGGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTAC