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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAACATTGAGAAATTGCAACTAGTTGAAGCTGAAAAGAAGAAGATTAGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttgtatatctccctccttcaattttgttcttttttttttttgttcttaggtatttttcttttaatttatttagtacatggaattgaacctgga...

Basic information

species Vitis vinifera
transcript Vv08s0056g00620.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349832600|gb|FQ421958.1|FQ421958
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110698903|gb|EE076929.1|EE076929
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|30133266|gb|CB918605.1|CB918605
EST:     ATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: ATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110723106|gb|EE100040.1|EE100040
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|351023437|gb|FQ432820.1|FQ432820
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|294963783|gb|GW836633.1|GW836633
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110378220|gb|EC943340.1|EC943340
EST:     GCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: GCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|351013904|gb|FQ434056.1|FQ434056
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110376043|gb|EC941082.1|EC941082
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110411460|gb|EC977174.1|EC977174
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110702891|gb|EE079258.1|EE079258
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|351017341|gb|FQ435693.1|FQ435693
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|294966352|gb|GW837603.1|GW837603
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|349819240|gb|FQ412134.1|FQ412134
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110702889|gb|EE079256.1|EE079256
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|161718482|gb|FC066332.1|FC066332
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110687935|gb|EE065911.1|EE065911
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|77587268|gb|DV222769.1|DV222769
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110702890|gb|EE079257.1|EE079257
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|110362618|gb|EC926164.1|EC926164
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|71859327|gb|DT008382.1|DT008382
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: gi|351015182|gb|FQ445466.1|FQ445466
EST:     AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT                         TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTCAACATTGAGAAATTGCAACTAGTTGAAGCTGAAAAGAAGAAGATTAGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttgtatatctccctccttcaattttgttcttttttttttttgttcttaggtatttttcttttaatttatttagtacatggaattgaacctgga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcct