Sequence
atgc intronic sequence ATGC exonic sequenceATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcatccgtatgtttcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggttatggatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 5'ss of exon 4
ATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcatccgtatgtttcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggttatggatg-----
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ATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCGgtatgctccttttgatctt--tgttacggctttgtgggggcacttcattctt--atatttgaaaaaccaaaagcacaacct-ggatacaacttttaaacaaacgc
upper sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 4
ATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcat----ccgtatgtttcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggttatggatg
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ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgttctcctttt-ttagccttgagtcatgatgccaagtactttgtcttgtactggaa-acttgacgaattatatgtatataatgtacggagtaaa--
upper sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G02400.1 (Glycine max), 5'ss of exon 1
------ATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcatccgtatgtttcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggtt--atggatg---
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CACGAGATCGTTACTCTCTGGTACCGTGCCCCCGAGGTTCTCCTTGGCTCTACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGgtcag--tcagtccaccct-ctctctctctctctctattctaattactttttgagtctttggatcaatgtttgcaaaatt--gattttgaatttaatggatttta
upper sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G38620.1 (Arabidopsis thaliana), 5'ss of exon 1
------ATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcatccgtatgtt-tcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggttatggatg
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CATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGTTCTACTCATTACTCTACTGCTGTTGATATTTGGTCTGTTGGATGCATCTTTGgttag---taatcag--ctactatgtctcttttaatggtcttttgttctactgtttggatt--actgatgtttccccatttttt--tgtag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110387384|gb|EC952045.1|EC952045EST: TACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTG CTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAAC
genomic: TACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctca ... tttcttgcagCTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcatccgtatgtttcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggttatggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa