Sequence
atgc intronic sequence ATGC exonic sequenceGGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttgtgtttttatcttctttctttggtgggttggtgctttgactgatttttttactgggtctttacgtctgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g02810.1 (Oryza sativa), 5'ss of exon 2
GGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttgtgtttttatc--ttctttctttggtgggttggtgctttgactg---atttttttactgggtctttacgtctgtag-----------------
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GGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTgtgagttgccaccttgttcaatattcactatggttg-ctgatgtctgttatgtacatggatacacggaacgttaacaattactcgtacaagaacatgatat
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os11g02830.2 (Oryza sativa), 5'ss of exon 2
GGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttgtgtttttatc--ttctttctttggtgggttg-gtgctttgactg-atttttttactgggtctttacgtctgtag-----------------
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GGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTgtgagttgccaacttgttcaatattcactatggttgctgatgtccgttatgtacatggatacgcggaacattaacaattactcgtacaagaacatgatat
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 2
GGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttg--tgtttttatcttctttctttggtgggttggtgctttgactgatttttttactgggtctttacgtctgtag---------------------
||||||||| ||||| ||||| ||||||||||| ||||| || || ||||| |||||||| | ||||| || ||| ||| || || |||||||||||||| || ||| || | ||| || | ||| | | | || | || || || | || | | |
GGGTTACATAGATGAAAATGTCAGGGTTGGGCTGAAGTCACTGCCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGGCACAGAGAATGGCTTgtgagtggaaacgttgttcagtaattttcatgctcacttgat-cagtaccttttcattata-tgcatggaaacatgagaaattgtctactaacatggtgtac
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G45200.1 (Glycine max), 5'ss of exon 2
-GGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttgtgtttttatcttctttctttggtgggttggtgctttgactgatttttttactg--ggtctttacgtctgtag------------------
||||||||||||||||| || || || || ||||| || ||||| || |||||||| || || ||||| ||||| || || || ||| |||| |||||||| | || || | | || | || | || ||| || ||| || | | |||||| || ||
AAGGTTACATTGATGAGAACGTCAGAGTCGGACTCAAATCGCTCCCTGTCGCTGTCAAAGTGTTAAACAAAGAGGGTTTACAAGGACATCGAGAGTGGCTtgtgcgtttttgcgtgattttttccttctttttttttttaaattttatttgttttcttaaattgcggtcttgtggtgagtcagaaaacttttacattacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351019747|gb|FQ439564.1|FQ439564EST: CTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTT ACGGAGGTGAACTTTTTAGGGCAGCTGAGGCATCCCAATCTGGTGAAGTTG
genomic: CTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttgt ... acgtctgtagACGGAGGTGAACTTTTTAGGGCAGCTGAGGCATCCCAATCTGGTGAAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTgtaagcttgtgtttttatcttctttctttggtgggttggtgctttgactgatttttttactgggtctttacgtctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG