Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22012300|gb|BQ797334.1|BQ797334EST: GGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTTCCACAG TGTGGAAGGAATTGGAGAAAGAGAACAAGGAGTTCTTCGAGTCCTACGCAA
genomic: GGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTTCCACAGgtcagcgatt ... gatactgcagTGTGGAAGGAATTGGAGAAAGAGAACAAGGAGTTCTTCGAGTCCTACGCAA
EST:
gi|110422937|gb|EC989271.1|EC989271EST: GGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTTCCACAG TGTGGAAGGAATTGGAGAAAGAGAACAAGGAGTTCTTCGAGTCCTACGCAA
genomic: GGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTTCCACAGgtcagcgatt ... gatactgcagTGTGGAAGGAATTGGAGAAAGAGAACAAGGAGTTCTTCGAGTCCTACGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTTCCACAGgtcagcgattaccttctcaaactccataactatatatatatatatatatatatatatatatatatatatatttatacatatgcttgtcctctgcataacacgtatatgcatatatatcttgatgatactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG