Sequence
atgc intronic sequence ATGC exonic sequenceTAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 2
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag
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TAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGgtataatgat-----cgggttagggtg--gatggattgtaaggattttg------actttattcatgagaggtttcttgttcaatgtag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 2
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag
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TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACATACTTGATATTCAATGTCGGGGATGCAATTTTCATTAGTGATTTGAATTCGCAAGACAAGgtatattggtcagattttgatg-gattttaag----aattttgggtttgcttca----tggttcatgagaggtttcttgttgcgtgtag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 2
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag
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TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgtatattggtcggagtttgatgaattttaatataagaatt-----------ttggatttgcttcatcagaggtttcttgttgcgtgtag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 2
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag
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TAATTCAACCACTAATTCAAATTTTGACGGGAACGGAACGTACTTGATCTTCAATGTAGGGGATGCAATTTTCATAAGTGATTTGAATTCACAAGACAAGgtatattggt------------tgggttaggtggatggattgtatttat--tttgattttattcacgagaggtttcttgttcaatgtag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 2
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctg-gctgcggttttaatcaataattc---atgtcttgcgttggaattggattttgaga----ggtttg------ttttttaatgtag
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TACTTCGATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGATGCTATTTTTATCTGTGACTTGAACTCACAAGAAAAGgtaatttcttcttttctttgttttccttttagtgatttggctgtaatgttctgttttttgttttgttttggaagtaatggtttaggaaacttctttgatgtag
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttgg--aattggattttgagaggtttgttttttaatgtag
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TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacctctactcgttttgttttc--ttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352791263|gb|FQ474953.1|FQ474953EST: TCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACACAAGATAAG GATCCCATAAAGTCTATACATTTTAGTAATTCGAATCCTGTTTGTCATGCA
genomic: TCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgat ... tttaatgtagGATCCCATAAAGTCTATACATTTTAGTAATTCGAATCCTGTTTGTCATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA