1 5' 3' | 2 5' 3' |
AAAAATGGCTAGACTAAAACAAGCCAAAGAAGAGGCTGAAAAGGAGATTGCTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAGgtaagtataggtggattcagtccattcataaagaactgagtcagattgacctattaaggcttctgagccttcttcacccatatggcatgtcacaatcaat...
species | Vitis vinifera |
transcript | Vv08s0040g01910.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAG AGCAGCGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAGEST: gi|30131526|gb|CB916865.1|CB916865
genomic: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAGgtaagtatag ... tacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
EST: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAG AGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
genomic: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAGgtaagtatag ... tacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATGGCTAGACTAAAACAAGCCAAAGAAGAGGCTGAAAAGGAGATTGCTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAGgtaagtataggtggattcagtccattcataaagaactgagtcagattgacctattaaggcttctgagccttcttcacccatatggcatgtcacaatcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcttc