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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTAGAGAAGGCTAGCAGTCAGATTGCTGTGCTGAAGAAACTTTACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattgttgtagtaataataataataataataataataataataataataataataataataataataataatatgttattgttattattattttt...

Basic information

species Vitis vinifera
transcript Vv08s0040g01630.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031601|gb|FQ459858.1|FQ459858
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351019552|gb|FQ439369.1|FQ439369
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351045913|gb|FQ441296.1|FQ441296
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351054135|gb|FQ450217.1|FQ450217
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351037841|gb|FQ464282.1|FQ464282
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351015919|gb|FQ431874.1|FQ431874
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351048601|gb|FQ448875.1|FQ448875
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCACAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351037852|gb|FQ464293.1|FQ464293
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351023294|gb|FQ432677.1|FQ432677
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|349828488|gb|FQ417230.1|FQ417230
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|122688630|gb|EC920009.1|EC920009
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351049390|gb|FQ449991.1|FQ449991
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351042935|gb|FQ451229.1|FQ451229
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|349826497|gb|FQ418588.1|FQ418588
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351037891|gb|FQ465129.1|FQ465129
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351055498|gb|FQ442294.1|FQ442294
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAACGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351026072|gb|FQ428084.1|FQ428084
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351047717|gb|FQ455114.1|FQ455114
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|122689997|gb|EC938839.1|EC938839
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351035274|gb|FQ459541.1|FQ459541
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
EST: gi|351052410|gb|FQ452443.1|FQ452443
EST:     TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAG                         GTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC
genomic: TACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattg ... ttgtatttagGTATCATGGTGAGTGGAGGAGTGAGACACAGACAGCAGTCTCATTGCTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTTTTAGAGAAGGCTAGCAGTCAGATTGCTGTGCTGAAGAAACTTTACAACCAACTTGGTGTGGTTCTTCAGGAATGCCCCGGGCAGTATTACAGgtaaggattgttgtagtaataataataataataataataataataataataataataataataataataataataatatgttattgttattattattttt

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