Sequence
atgc intronic sequence ATGC exonic sequenceTTAAAAGGCAAACACGGCAATGGGCTGCTTGGACACGTCAAGAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgtttttcttgatatatttttgttattcaacttctatactttgctataggtcctaactgcaagaatatcaactgttaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G05420.1 (Glycine max), 5'ss of exon 3
---TTAAAAGGCAAACACGGCAATGGGCTGCTTGGACACGTCAAGAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgtttttcttgatatatttttgttattcaacttctatactttgctatag-gtcctaactgcaagaatatcaactgttaattgcag
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CTACAAAAAAACCGACCAGGCAGTGGGCTGCGTGGACTCGACAAGAGGAGGAAAGTTTCTTCACCGCGTTACGACAAGTTGGGAAGgtacatttatcttt-cgtgttgttacatttctgtgtttgtttcttatggtatcataatgattgctgatcgaaatattcttgaatgtag
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G23840.1 (Glycine max), 5'ss of exon 3
---TTAAAAGGCAAACACGGCAATGGGCTGCTTGGACACGTCAAGAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgtttttcttgatatatttttgttattcaacttctatactttgctatag-gtcctaactgcaagaatatcaactgttaattgcag
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CTACAAAAAAACCGACCAGGCAGTGGGCTGCATGGACTCGACAAGAGGAGGAAAGTTTCTTCACCGCGTTACGACAAGTTGGGAAGgtacatttatctttg-gtgttgttacctttctgtgtttgtttcttatggtatcataatgatttctgatcgaaatattcttgaatgtag
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G23840.2 (Glycine max), 5'ss of exon 2
-----------------TTAAAAGGCAAACACGGCAATGGGCTGCTTGGACACGTCAAGAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgtttttcttgatatatttttgttattcaacttctatactttgctatag-gtcctaactgcaagaatatcaactgttaattgcag
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GATGTCGTATATAGCTACAAAAAAACCGACCAGGCAGTGGGCTGCATGGACTCGACAAGAGGAGGAAAGTTTCTTCACCGCGTTACGACAAGTTGGGAAGgtacatttatctttg-gtgttgttacctttctgtgtttgtttcttatggtatcataatgatttctgatcgaaatattcttgaatgtag
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G36960.3 (Arabidopsis thaliana), 5'ss of exon 3
TTAAAAGGCAAACACGGCAATGGGCTGCTTGGACACGTCAAGAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgtttttcttgatatatttttgttattcaacttctatactttgctataggtcctaactgcaagaatatcaactgttaattgcag
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CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtat---caccttgacgt--tcttcttctctatgttgt-taacctgttatgtgtgtgaaccttctctttgt--gttgtt--ttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28963174|gb|CB342207.1|CB342207EST: GAGGAGG-AAGTTTCTTCACTGCATTGCGACAAGTTGGCAAG AATTTTGAGAAGATTACTTGTCGTGTCCAAAGTAAAAACAAGGATCAG
genomic: GAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgttttt ... ttaattgcagAATTTTGAGAAGATTACTTGTCGTGTCCAAAGTAAAAACAAGGATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTAAAAGGCAAACACGGCAATGGGCTGCTTGGACACGTCAAGAGGAGGAAAGTTTCTTCACTGCATTGCGACAAGTTGGCAAGgcatgtttttcttgatatatttttgttattcaacttctatactttgctataggtcctaactgcaagaatatcaactgttaattgcag
- - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGGA