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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTGCTGAGGCAAAGGTTGGGGTTAACAAGCCAGACTTGCTCCCGAAAGAATTTAGTTCAGTTATTGATGTTGCGGGCTTCCTCTCTGATGGCCAGgtgtgtttgatttttcgtcttctttttttggtttatcattactgttggcatttctaggtactgcctgtttctttggattttctgttatttttttagagtc...

Basic information

species Vitis vinifera
transcript Vv08s0040g01400.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G06430.2 (Glycine max), 5'ss of exon 2
TGAATGTGCTGAGGCAAAGGTTGGGGTTAACAAGCCAGACTTGCTCCCGAAAGAATTTAGTTCAGTTATTGATGTTGCGGGCTTCCTCTCTGATGGCCAGgtgtgtttgatttttcgtcttctttttttggtttatcatt---actgttggcatttctaggtactgcctgtttctttggattttctgttatttttttagagtc
 |    ||  |  ||||| ||||| || ||||||||||| |||||||| || || |||||| | || ||||||||||| || ||||| || ||||| |||||    | |  || |||   |||||        | | |||       ||| | |  | | | | |   ||   ||  ||| ||    |     | || |  | 
CGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGCTCCCCAAGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgt---ctcgtgttctcgcaatctttgcaaacactttaattcaagtctttgacgtgacaatgcattttttgaagctcaggaattgaaatcgacctgtttgtatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689960|gb|EE066639.1|EE066639
EST:     AAGAATTTAGTCCAGTTATTGATGTTGCGGGCTTCCTCTCTGATGGCCAG                         GAGAAGAGGCTGGCACAGGAGATCACTAATATTGAAAAGGATACAGGATTC
genomic: AAGAATTTAGTTCAGTTATTGATGTTGCGGGCTTCCTCTCTGATGGCCAGgtgtgtttga ... taatttgcagGAGAAGAGGCTGGCACAGGAGATCACTAATATTGAAAAGGATACAGGATTC