Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCAATCCAGTGGTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g00390.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G27380.1 (Glycine max), 5'ss of exon 2
AAAACCAATCCAGTGGTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcag
|||||||| || ||||| |||||||||||||| || ||||| || ||||||||||||||||||||||||| ||||  || | |||| ||     ||  | |  | |  |   ||     ||    |         ||| | ||     | | ||| ||    |  |                                         
AAAACCAACCCTGTGGTGGCTGAGATTTTCTCACTGATGTCTAGGGATGAAGCCAGGCATGCTGGgtatggaaacgcct-tgtgcctttaatttttaattatccttctttg-attttctatttgatatcttgtttgtagtgcatgacctcattttgattctgtgcag----------------------------------------

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G30350.1 (Glycine max), 5'ss of exon 2
AAAACCAATCCAGTGGTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagctt--ttaactgaaaagtctgaaataaacttcatgttctgctgttgcag
|||||||| || ||||| || |||||||||||||| ||||| || ||||||||||||||||||||||||| | ||| || | |||| ||     ||| | | ||    || |     || || ||   |   |   | | |    ||||| ||   || || |  |||  |  |   | || |                          
AAAACCAACCCCGTGGTGGCAGAGATTTTCTCTCTGATGTCTAGGGATGAAGCCAGGCATGCTGGgtatggacacacct-tgtgcctttaa---ttcttaattctcattctttcatttcctatttgatatctcgtttga-atgtttgttgtgt---atggcctcattattttgattctgtgcag-------------------------

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G56940.2 (Arabidopsis thaliana), 5'ss of exon 3
AAAACCAATCCAGTGGTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcag
||||| || || || || |||||||| |||||||||||||| ||||||||||| || ||||| ||||| |     | ||||   | ||     | ||     | |     |  ||  |||   ||      | |  |  |   || |                                                            
AAAACAAACCCTGTTGTGGCTGAGATCTTCTCTCTTATGTCTAGAGATGAAGCAAGACATGCCGGgtaag-----atctcttaacactaaggacctctcttttta-atctaagtgtttcaattttgatgataaactttttttggcag------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732253|gb|EE107380.1|EE107380
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGGACTTGGGGT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGG-ACTTGGGGT
EST: gi|352791502|gb|FQ481081.1|FQ481081
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|28969822|gb|CB348855.1|CB348855
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|352778429|gb|FQ465739.1|FQ465739
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTTGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|294965645|gb|GW837244.1|GW837244
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAAATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGGTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|30322726|gb|CD005988.1|CD005988
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110724517|gb|EE100412.1|EE100412
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351026713|gb|FQ436366.1|FQ436366
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351055180|gb|FQ440519.1|FQ440519
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|161714870|gb|FC063021.1|FC063021
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71870159|gb|DT019214.1|DT019214
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|77580042|gb|DV218905.1|DV218905
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTT
EST: gi|351048585|gb|FQ448859.1|FQ448859
EST:     GTGGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110729798|gb|EE106146.1|EE106146
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|32269653|gb|CD718812.1|CD718812
EST:     GAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|161706635|gb|FC055865.1|FC055865
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110712749|gb|EE088065.1|EE088065
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349821299|gb|FQ404431.1|FQ404431
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71868014|gb|DT017069.1|DT017069
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|161717571|gb|FC067882.1|FC067882
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110413967|gb|EC979787.1|EC979787
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|32269889|gb|CD719048.1|CD719048
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110357447|gb|EC920994.1|EC920994
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351017331|gb|FQ435683.1|FQ435683
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110733128|gb|EE109048.1|EE109048
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110690290|gb|EE067270.1|EE067270
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGCGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|33402633|gb|CF208260.1|CF208260
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110377336|gb|EC942399.1|EC942399
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351025889|gb|FQ427901.1|FQ427901
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351016901|gb|FQ424328.1|FQ424328
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349831084|gb|FQ420754.1|FQ420754
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71890449|gb|DT039504.1|DT039504
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|32269860|gb|CD719019.1|CD719019
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGNGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349825386|gb|FQ418107.1|FQ418107
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349823490|gb|FQ414900.1|FQ414900
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110701920|gb|EE080044.1|EE080044
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAAGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71872375|gb|DT021430.1|DT021430
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351014021|gb|FQ434173.1|FQ434173
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|29785892|gb|CB343233.2|CB343233
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110368306|gb|EC932277.1|EC932277
EST:     CCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: CCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351053845|gb|FQ441611.1|FQ441611
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110688738|gb|EE067634.1|EE067634
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110731742|gb|EE106421.1|EE106421
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110395920|gb|EC961594.1|EC961594
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110404884|gb|EC970409.1|EC970409
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACA
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACA
EST: gi|110395617|gb|EC961284.1|EC961284
EST:     GTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAAGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|26265284|gb|CA816347.1|CA816347
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110393414|gb|EC958633.1|EC958633
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110717714|gb|EE093810.1|EE093810
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351025174|gb|FQ433591.1|FQ433591
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351039374|gb|FQ461241.1|FQ461241
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACCAATCCAGTGGTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcag

- - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG