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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTTCCTGTACAGATGAAAATTTTATAATCAAGTCTGGAGCTCAACGTGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaacacttctagaattaatgttcaacatgcttaagtaaacatcaattttctaccacaaatttttaaaattttttttggcttgttgctcattttgc...

Basic information

species Vitis vinifera
transcript Vv08s0007g09010.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77581907|gb|DV219914.1|DV219914
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110687388|gb|EE064765.1|EE064765
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|34550413|gb|CF518631.1|CF518631
EST:     CTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: CTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|37189949|gb|CF609298.1|CF609298
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110719520|gb|EE094721.1|EE094721
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110720771|gb|EE096986.1|EE096986
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|349825963|gb|FQ415768.1|FQ415768
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|37190694|gb|CF610043.1|CF610043
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|294966328|gb|GW837579.1|GW837579
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110367745|gb|EC931696.1|EC931696
EST:     CCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: CCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110713210|gb|EE088932.1|EE088932
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110685290|gb|EE063541.1|EE063541
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|351015480|gb|FQ447309.1|FQ447309
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110403744|gb|EC969476.1|EC969476
EST:     TCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110707831|gb|EE084680.1|EE084680
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110720121|gb|EE095776.1|EE095776
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|351013248|gb|FQ424953.1|FQ424953
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110384036|gb|EC948449.1|EC948449
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|30303234|gb|CB980028.1|CB980028
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110416702|gb|EC982699.1|EC982699
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|110402055|gb|EC968688.1|EC968688
EST:     CTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: CTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|161715442|gb|FC069433.1|FC069433
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|352794409|gb|FQ481640.1|FQ481640
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|351040136|gb|FQ425222.1|FQ425222
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|37190457|gb|CF609806.1|CF609806
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTG-CCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|351027863|gb|FQ448433.1|FQ448433
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|161718850|gb|FC066651.1|FC066651
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|349824260|gb|FQ417647.1|FQ417647
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
EST: gi|161717616|gb|FC065629.1|FC065629
EST:     TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAA                         GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG
genomic: TGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaaca ... tttgtcatagGGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCTTTCCTGTACAGATGAAAATTTTATAATCAAGTCTGGAGCTCAACGTGTTGCTTCAAGTGAAGGAATTGCTCTAGTTGCCCCTGATACATCACCAAgtaagcaacacttctagaattaatgttcaacatgcttaagtaaacatcaattttctaccacaaatttttaaaattttttttggcttgttgctcattttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accacaaa