Sequence
atgc intronic sequence ATGC exonic sequenceAAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 3
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagt-tgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTCTGAGACAACCACATTTCATTGTCTGGGATAACAGTGATCTTGTTACACATGAGGTGATGGGTGGTTTGAAGAATGTCTACGCCATCGGTGCTGgtaagaatattttaaatacgttctgtttgttttccaaaatattaactatctttataacagtaaaaataattaac-taatcctactaacaaacg-aatggagt--------------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g41590.1 (Oryza sativa), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctgg-ttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAATTTCTGAGGCAGCCTCATTTTATTGTGTGGGATAATAGTGATCTCATCACTCATGAAGTAATGGGCGGCTTAAAGAACATATATGCCATTGGTGCTGgtaagttcc------------atggtctcatatctgacgttttat-gtccata-----tcacct-tgaaaatttttaactgggaaaataaaaccatcatgtggcttttcttgttgaagc---------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g58740.1 (Oryza sativa), 5'ss of exon 3
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagata-aacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAATTTTTGAGGCAGCCTCATTTTATTGTATGGGATAATAGTGATCTCATTACACATGAAGTCATGGGAGGTTTGAAAAATGTGTATGCCATTGGTGCCGgtaatttctatttcctctct--tgattgttt--ttgctatctt-ctgtaatcacggtagagcatat----actgttgtgatatttagcatggggtatgttggaatgcac-------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G173195_T01 (Zea mays), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AATTTCTTGAGGCAACCTCATTTTATTGTATGGGACAATAGTGATCTCATTACTCATGAAGTCATGGGCGGCTTAAAAAACGTATATGCCATTGGGGCCGgtaagttatt---------tgatc-cagaaaaatggaatttccatt-tgctc------tcttttcccag--ttcttatgagata--cttggtcaatcattgcatatttgatgt--ttcatcaa----------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 3
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTTTGAGGCAGCCACATTTCATTGTCTGGGACAACAGTGATCTTGTCACCCATGAGGTGATGGGTGGCCTGAAGAATGTCTATGCAATCGGTGCTGgtaa-tactaacttctgtctttttttaac----tgacaatattattgtacaataggcatcctactac----ttgatgttgaagaaaacataacaaacatgtaaatgttt------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 3
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgt-tatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTTTGAGGCAGCCTCATTTTATTGTGTGGGATAACAGTGATCTCATCACTCATGAAGTCATGGGTGGCTTAAAAAATGTCTATGCTATTGGTGCTGgtaatttctatttgtctttttcactgtttcctgttttcttgattacactgg--agagctacatatatcattatattaagaataaaaagatgggctagaaacc--------------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctt-tacagctaagaagtaacttg----ttctaatctgtattgccatatcttttatatgtta-taatggttgcgatt---------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G15900.1 (Glycine max), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatc-tggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGATCATGGGTGGCCTGAAAAATGTCTATGCAATTGGTGCCGgtaagcttcaaattagttaacagcataa-gttttacagctaatgtgaaacttgtagtaatctgtattgccatgtcttttatatg-----ttgtaatggttgtgact----------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G31730.1 (Glycine max), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTTTGCGCCAACCACACTTTATTGTCTGGGATAACAGTGATCTCGTCACTCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGAGCTGgtaagctactaattaattgttatatctttacatgccatg-----tcaaacttgcagtaatccatatcatcatgtttt-------ggtttgtgtaatgttgtctatttcactt---------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G28970.1 (Glycine max), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTTTACGACAACCACACTTTATTGTCTGGGATAACAGTGACCTCGTCACGCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATAGGAGCTGgtaagcttctaattaattgttataactttacatgcaagg-----tcaaacttgcagtaat-tatatcatcgtgtttt-------ggtttgtgtaatgttgtcaatttcactag--------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G41540.2 (Arabidopsis thaliana), 5'ss of exon 3
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcata-tatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTCTTAAGACAACCTCATTTCATTGTTTGGGACAATAGTGATCTTGTGACACATGAAGTAATGGGAGGTCTCAAGAATGTCTACGCCATTGGAGCTGgtaagtt------tctgtatg-tagacacggatttgagtgataattat---caagttttcacactttgatccttcttgttgtgttcag----------------------------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S114_190V6.1 (Physcomitrella patens), 5'ss of exon 4
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttat-----ttctttatgatggtaatata-atagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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AAGTTTCTGCGCCAGCCACACTTTATTGTGTGGGATAATCCTGACATTGTCACACATGAGGTCATGGGTGGTCTTAAGAATGTGTACGCCATTGGTGCCGgtgagccactgtcacgatcctctgtgttagtcttctatgcattgagaatgtaatcatctaatgttttctcattc-tagcctttagagttaaatcactg-aat-------------------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ25021 (Selaginella moellendorffii), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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CGTTTCCTGAGGCAGCCGCATTTTGTGGTGTGGGACAACAGCGACCTCGTTACTCATGAAGTCATGGGAGGCTTGAAGAACGTCTACGCAATTGGTGCCGgttagtgttcaagttcttagtttcttgtttggaaaacgaaagaaatgt-tctaaaatctttggctcgctcacag-----------------------------------------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ15326 (Selaginella moellendorffii), 5'ss of exon 2
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
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CGTTTCCTGAGGCAGCCGCATTTTGTGGTGTGGGACAACAGCGACCTCGTTACTCATGAAGTCATGGGAGGCTTGAAGAACGTCTACGCAATTGGTGCCGgttagtcttcaagttcttagtttcttgtttggaaaacgaaagaaatgt-tctaaaatctttggttcgctcacag-----------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349821528|gb|FQ408087.1|FQ408087EST: CACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCG GAATGGTAGCAGCCCTGACCAATGAGAGTGCTACCAGCAAATCTGTATACT
genomic: CACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgtt ... gattttccagGAATGGTAGCAGCCCTGACCAATGAGAGTGCTACCAGCAAATCTGTATACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG