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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGTGTGGAAAAGACGGCATCTCAGCAGGAAATTAAGAAAGCTTACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttgatttctaatgatgccaaaatcctattctccatatatccgttgcaagggtggttttctggttgttaccctttgtttttttccctcatgtag

Basic information

species Vitis vinifera
transcript Vv08s0007g07960.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G12350.1 (Glycine max), 5'ss of exon 2
GTTCTTGGTGTGGAAAAGACGGCATCTCAGCAGGAAATTAAGAAAGCTTACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttgatttctaatgatgccaaaatcctattctcca-tatatccgttgcaagggtggttttc--tggttgttaccctttgtttttttccctcatgtag
|||||||||||||| || || |||||||| |||||||| ||||| || ||||| |||||||||||| |||| ||||||||||| || |||||||||||||||  ||||   |||| || | ||    |  | | ||| | |  ||   ||| ||   | | | |    |||||| |    |  | |||| |          
GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCTGGTGATGAGgtgt-tttg---tctagtgtttcc----tgttgtcctctaattgatttattgaaattatagatgttagcggttgtaattgatcatcttttacag--------

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G31080.1 (Glycine max), 5'ss of exon 2
GTTCTTGGTGTGGAAAAGACGGCATCTCAGCAGGAAATTAAGAAAGCTTACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttgatttctaatgatgcc-aaaatcctattctccatatatccgttgcaagggtggttttctggttgttaccctttgtttttttccctcatgtag
|||||||||||||| || || |||||||| |||||||| ||||| || ||||| |||||||||||| |||| ||||||||||| || || || ||||||||    ||  | |||| || | ||     |||| |  |  || |||       |  | ||  |||  |||||| |    |  | |||| |          
GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAGgt----tttttgtctagtgtttcctgttgtcctctaattgatttattaaagttatagatg--tttgcggttgtaattgatcatcttttacag--------

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
GTTCTTGGTGTGGAAAAGACGGCATCTCAGCAGGAAATTAAGAAAGCTTACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGA---Ggtgcatttgatttctaatgatgccaaaatcctat---tctccatatatccgttgcaagggtggttttctggttgttaccctttgtttttttccctcatgtag
  |||||| ||||| |  ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||| || || ||||| || |||||||||||   |||   | |  |  |  |  ||||||  ||  | |   |   || || |   |||| ||  |  |||| |  ||          | |    |||   |  |  
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351015510|gb|FQ447339.1|FQ447339
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|349825564|gb|FQ419481.1|FQ419481
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|352794289|gb|FQ479531.1|FQ479531
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|351028672|gb|FQ446345.1|FQ446345
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|351054628|gb|FQ456825.1|FQ456825
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCCTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|110686833|gb|EE063714.1|EE063714
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|349827514|gb|FQ422382.1|FQ422382
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|351048863|gb|FQ431528.1|FQ431528
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|351023284|gb|FQ432667.1|FQ432667
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
EST: gi|351040488|gb|FQ434621.1|FQ434621
EST:     ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAG                         GAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT
genomic: ACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGAGgtgcatttga ... cctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGT