1 5' 3' | 2 5' 3' |
AATCAAGACTAATTGGATCATGCATGAGTATCGCCTAGCTCAGCCCCCCAACCCCGCCATCAACAAACCCCCCCTCAAGCTCAGAGATGCATCCATGAGGgtgagcactctatcctattcgtttagacttttgtttttggagatatactgcgcttatagtgaagttactgcgccgccatgctcatgccttgttttacact...
species | Vitis vinifera |
transcript | Vv08s0007g07670.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCCGCCATCAACAAANNNNNNNTCAAGCTCAGAGATGCATCCATGAGG TTGGATAATTGGGTTCTCTGCCGGATCTACAAGAAATCCAATGCGGTTCCTEST: gi|71871731|gb|DT020786.1|DT020786
genomic: ACCCCGCCATCAACAAACCCCCCCTCAAGCTCAGAGATGCATCCATGAGGgtgagcactc ... tttcctttagTTGGATAATTGGGTTCTCTGCCGGATCTACAAGAAATCCAATGCGGTTCCT
EST: ACCCCGCCATCAACAAANNNNNNNTCAAGCTCAGAGATGCATCCATGAGG TTGGATAATTGGGTTCTCTGCCGGATCTACAAGAAATCCAATGCGGTTCCT
genomic: ACCCCGCCATCAACAAACCCCCCCTCAAGCTCAGAGATGCATCCATGAGGgtgagcactc ... tttcctttagTTGGATAATTGGGTTCTCTGCCGGATCTACAAGAAATCCAATGCGGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCAAGACTAATTGGATCATGCATGAGTATCGCCTAGCTCAGCCCCCCAACCCCGCCATCAACAAACCCCCCCTCAAGCTCAGAGATGCATCCATGAGGgtgagcactctatcctattcgtttagacttttgtttttggagatatactgcgcttatagtgaagttactgcgccgccatgctcatgccttgttttacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctatcc