Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagattttcttctagtacggcatgcctagagtgtgatgaatgaaaatctagttatgtcaatgtgaatttacttttgttggcccattgtgttgatctagattttgaaaattatatgtacctag

Basic information

species Vitis vinifera
transcript Vv08s0007g07290.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G08010.2 (Glycine max), 5'ss of exon 2
CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagattttcttctagtacggcatgcctagagtgtgatgaatgaaaatctagttatgtcaatgtgaatttacttttgttggcccattgtgttgatctagattttgaaaattatatgtacctag
||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| || || ||||| || || | ||    | ||  |  |    |||      |||| |  | |  |  |||     ||    |  |     |||||   |    || |  | |  ||| |   |||             
CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctttgctttgt-tgatagttgtagttgaatatgagttcatacttcattacaattatccatacct-----tgttgattc--catgattgtatgtattgtattaatag-----------

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G08010.1 (Glycine max), 5'ss of exon 2
---CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagattttcttctagtacggcatgcctagagtgtgatgaatgaaaatctagttatgtcaatgtgaatttacttttgttggcccattgtgttgatctagattttgaaaattatatgtacctag
   ||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| || || ||||| || || | ||    | ||  |  |    |||      |||| |  | |  |  |||     ||    |  |     |||||   |    || |  | |  ||| |   |||             
CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctttgctttgt-tgatagttgtagttgaatatgagttcatacttcattacaattatccatacct-----tgttgattc--catgattgtatgtattgtattaatag-----------

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G27010.1 (Glycine max), 5'ss of exon 2
CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagattttcttctagtacggcatgcctagagtgtgatgaatgaaaatctagttatgtcaatgtgaatttacttttgttggcccattgtgttgatctagattttgaaaattatatgtacctag
||||||||||| || |||||||| || |||||||||||||||||||  |||||||||||||||||||| |||||||||||||| || || ||||| || || | ||    | ||     |||| |  |||    |||||   | |  |  ||  ||| |   ||||| |||   |||    |||  ||   | ||  | || | |               
CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAAACATCATACGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctttgctttgttg---atgcttgtagt----tgaatctgagttca--tacttcattacaaattttcttaccttg-ttgatttcgtgattgtatgtattaatag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584274|gb|CB006969.1|CB006969
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110707560|gb|EE084097.1|EE084097
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110392292|gb|EC957611.1|EC957611
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|18458812|gb|BM437090.1|BM437090
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71868753|gb|DT017808.1|DT017808
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|77578922|gb|DV218274.1|DV218274
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|32271452|gb|CD720611.1|CD720611
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|32271176|gb|CD720335.1|CD720335
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71887970|gb|DT037025.1|DT037025
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|161706472|gb|FC054993.1|FC054993
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|37184327|gb|CF603681.1|CF603681
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71874537|gb|DT023592.1|DT023592
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71871671|gb|DT020726.1|DT020726
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110715382|gb|EE093367.1|EE093367
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110412503|gb|EC978253.1|EC978253
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110703618|gb|EE080622.1|EE080622
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|33410042|gb|CF215669.1|CF215669
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71868631|gb|DT017686.1|DT017686
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110368476|gb|EC932455.1|EC932455
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|161718984|gb|FC068639.1|FC068639
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110409610|gb|EC975276.1|EC975276
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110395237|gb|EC960891.1|EC960891
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|27580004|gb|CB002699.1|CB002699
EST:     GTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: GTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71866632|gb|DT015687.1|DT015687
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110706237|gb|EE081585.1|EE081585
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110709127|gb|EE084314.1|EE084314
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|87586503|gb|DY474749.1|DY474749
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110366710|gb|EC930626.1|EC930626
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|33409969|gb|CF215596.1|CF215596
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71856869|gb|DT005924.1|DT005924
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|37184453|gb|CF603807.1|CF603807
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71874294|gb|DT023349.1|DT023349
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|37183972|gb|CF603326.1|CF603326
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|30135098|gb|CB920436.1|CB920436
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCGGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110398076|gb|EC964178.1|EC964178
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|254914253|gb|GR906354.1|GR906354
EST:     CCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71865585|gb|DT014640.1|DT014640
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110394098|gb|EC958585.1|EC958585
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110709277|gb|EE084597.1|EE084597
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|349827438|gb|FQ422306.1|FQ422306
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|32249585|gb|CD715404.1|CD715404
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|161718168|gb|FC068899.1|FC068899
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|32248165|gb|CD713984.1|CD713984
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110393740|gb|EC959193.1|EC959193
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|71855507|gb|DT004562.1|DT004562
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
EST: gi|110393896|gb|EC959460.1|EC959460
EST:     CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACG                         GTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG
genomic: CCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagatttt ... atgtacctagGTTGAAGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagattttcttctagtacggcatgcctagagtgtgatgaatgaaaatctagttatgtcaatgtgaatttacttttgttggcccattgtgttgatctagattttgaaaattatatgtacctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA