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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATGGCAGTTGAGGTCGCTGATGCTGCTGGTGGAATTACCAATCTTCAGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatctcgatcttgtttttctcagatgtagttgtttgctatatcattctgttcccttcaattcttctgttgtcattaattttttccttatcattat...

Basic information

species Vitis vinifera
transcript Vv08s0007g07220.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30254478|gb|CB971223.1|CB971223
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGACGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110397360|gb|EC963092.1|EC963092
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|77585543|gb|DV221862.1|DV221862
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|77587163|gb|DV222711.1|DV222711
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|37187486|gb|CF606839.1|CF606839
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110366734|gb|EC930652.1|EC930652
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110690648|gb|EE067989.1|EE067989
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110381808|gb|EC935439.1|EC935439
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110362066|gb|EC925573.1|EC925573
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110384813|gb|EC949278.1|EC949278
EST:     CTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: CTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110724236|gb|EE099885.1|EE099885
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110727075|gb|EE103444.1|EE103444
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|161709614|gb|FC058007.1|FC058007
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|161719032|gb|FC067652.1|FC067652
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110691236|gb|EE069106.1|EE069106
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110698863|gb|EE076849.1|EE076849
EST:     AGGAGATGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|351030727|gb|FQ438565.1|FQ438565
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110378204|gb|EC943323.1|EC943323
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110365695|gb|EC929082.1|EC929082
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|161712010|gb|FC060039.1|FC060039
EST:     AGGACACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110689077|gb|EE064986.1|EE064986
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110363572|gb|EC927170.1|EC927170
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110730006|gb|EE106594.1|EE106594
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110391483|gb|EC956461.1|EC956461
EST:     CTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: CTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|77579066|gb|DV218359.1|DV218359
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|71870145|gb|DT019200.1|DT019200
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110360526|gb|EC923702.1|EC923702
EST:     GCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: GCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110702525|gb|EE081337.1|EE081337
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110729763|gb|EE106071.1|EE106071
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110701952|gb|EE080108.1|EE080108
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|71855366|gb|DT004421.1|DT004421
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|161712064|gb|FC061436.1|FC061436
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|37190649|gb|CF609998.1|CF609998
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110714778|gb|EE092075.1|EE092075
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|351019313|gb|FQ429473.1|FQ429473
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|22014248|gb|BQ799282.1|BQ799282
EST:     CGCTGGAGC-TTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTTGCTGTGAATCCAGCCAAGCA
genomic: CGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACA-TTGCTGTGAATCCAGCCAAGCA
EST: gi|110717318|gb|EE093071.1|EE093071
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110414140|gb|EC979966.1|EC979966
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110715709|gb|EE094070.1|EE094070
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110390058|gb|EC954943.1|EC954943
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110410333|gb|EC976014.1|EC976014
EST:     ACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: ACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110724060|gb|EE099555.1|EE099555
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATCTCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110367197|gb|EC931123.1|EC931123
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|30254126|gb|CB971141.1|CB971141
EST:     TCAACCGCTGGAGCTTTGACGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: TCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|351041459|gb|FQ447586.1|FQ447586
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACCTATCTCTGGAGGACTACATTGCTGTGAATCCAGCCCAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
EST: gi|110402662|gb|EC960696.1|EC960696
EST:     AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAG                         ATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT
genomic: AGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatct ... atttgcacagATTTCTGACATATCTCTGGAGGACTACATTGCTGTGAATCCAGCCAAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAATGGCAGTTGAGGTCGCTGATGCTGCTGGTGGAATTACCAATCTTCAGGAGACGACTGTGAAGCTCTTCAACCGCTGGAGCTTTGATGAAGTGCAGgtttcaatctcgatcttgtttttctcagatgtagttgtttgctatatcattctgttcccttcaattcttctgttgtcattaattttttccttatcattat

- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT