1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGAAAATGACTCAAATTATGTTCGAGACCTTCAACACACCCGCCATGTATGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGgtaagcaattctactactttttctcttgcttggcatctaaatttgaaatcataggcattgccaacctggtaaaaaggcaaatttgcaagaaaaatgtaac...
species | Vitis vinifera |
transcript | Vv08s0007g06520.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTG GTATTGTTCTGGACTCTGGTGATGGTGTGAGCCACEST: gi|161719596|gb|FC067042.1|FC067042
genomic: TGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGgtaagcaatt ... tgatattcagGTATCGTTCTGGACTCTGGTGATGGTGTGAGCCAC
EST: TGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTG GTATCGTTCTGGACTCTGGTGATGGTGTGAGCCACACAGTCCCCATTTATGEST: gi|110371371|gb|EC935344.1|EC935344
genomic: TGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGgtaagcaatt ... tgatattcagGTATCGTTCTGGACTCTGGTGATGGTGTGAGCCACACAGTCCCCATTTATG
EST: TGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTG GTATTGTTCTGGACTCTGGTGATGGTGTGAGCCACACAGTCCCCATTTATG
genomic: TGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGgtaagcaatt ... tgatattcagGTATCGTTCTGGACTCTGGTGATGGTGTGAGCCACACAGTCCCCATTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAAATGACTCAAATTATGTTCGAGACCTTCAACACACCCGCCATGTATGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGgtaagcaattctactactttttctcttgcttggcatctaaatttgaaatcataggcattgccaacctggtaaaaaggcaaatttgcaagaaaaatgtaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa