Sequence
atgc intronic sequence ATGC exonic sequenceCTTAACAAGCCAGAGGGTGAGAAGAAGCCCTTGCCCGTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGAgtatgttttcctttttcttctgaatcttctctttcctttacctgtgcccaagtttgtaggtttggggtttacttttttgtaagatgcaagctaatagaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G06240.1 (Glycine max), 5'ss of exon 1
--------------CTTAACAAGCCAGAGGGTGAGAAGAAGCCCTTGCCCGTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGAgtatgttttcctttttcttctgaatcttctctttcctttacctgtgccc---aagtttgtaggtttggggtttacttttttgtaagatgcaagctaatagaat
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TGGTTTATGCGCAGCTCAACAAACCCGATCAAGAGAGACCCCCTTTACCCGTCGACGAAGATTTGCCTGGGATGGGCCAGTACTATTGCCTTCACTGCGAgtaattttcttttcttcctcatttttttgtgccctttttgtcaatatatgaaaagtttgtaaatttgattatt-ctataacatggggttgaaaattttggg--
upper sequence: Vv08s0007g05070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G20550.1 (Glycine max), 5'ss of exon 1
--------------CTTAACAAGCCAGAGGGTGAGAAGAAGCCCTTGCCCGTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGAgtatgttttcctttttcttctgaatcttctctttcctttacctgtgcccaagtttgtaggtt-tggggtttacttttttgtaagatgcaagctaatagaat
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TGGTTTATGCGCAGCTGAACAAACCCGATGAAGAGAGAGCCCCTTTACCCCTCGATGAAGATTTGCCTGGGATGGGCCAGTACTATTGCCTTCACTGCGAgta-atttccttttcttcctcaatttttttggtgcttttttttgtcattatagaaaaagtttgtaaatttgatgattctataacatggggttgaaaagttt
upper sequence: Vv08s0007g05070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G36930.1 (Arabidopsis thaliana), 5'ss of exon 2
--------------CTTAACAAGCCAGAGGGTGAGAAGAAGCCCTTGCCCGTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGAgtatgtt--ttcctttttcttctgaatcttctctttcctttacctgtgcccaagtttgtaggtttggggtttactttt---ttgtaagatgcaagctaatagaat----------------------
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TGGTTTACACAGAGTTGCGTAAACCGGAGACGGAGATTAAGCCGTTACAGCTTGACGAGGATTTGCCTGGAATGGGTCAATTCTACTGCTTACACTGCGAgtaagagagattctatgattactctattgacgattcttttggtttatgaaacttttttttagcaaatacattatctttgaattactctatatgacccatttgtttgttttaccttgatatgttttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46911131|gb|CN546506.1|CN546506EST: GTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGA TCGGTACTTTGCGAATGTGGCGGTCAGGGATGAACATTTCAAGACGAAGCG
genomic: GTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGAgtatgttttc ... ctggtttcagTCGGTACTTTGCGAATGTGGCGGTCAGGGATGAACATTTCAAGACGAAGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTAACAAGCCAGAGGGTGAGAAGAAGCCCTTGCCCGTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGAgtatgttttcctttttcttctgaatcttctctttcctttacctgtgcccaagtttgtaggtttggggtttacttttttgtaagatgcaagctaatagaat
- - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaa