Sequence
atgc intronic sequence ATGC exonic sequenceTTTGGAACGGTTGGTGGAGTCGGAGGAGGAGGCATTTTTGTTCCTATGCTTACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAATgtaaatcttctttatttgatctttttatctcactttctgcaattcaaaagccagattttctttcccaaatttgaatctaatatcagttcatttatttatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G21310.2 (Glycine max), 5'ss of exon 2
TTTGGAACGGTTGGTGGAGTCGGAGGAGGAGGCATTTTTGTTCCTATGCTTACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAATgtaa--atcttctttatttgatctttttatctcactttctgcaattcaaaagccagattttctttcccaaatttgaatcta-atatcagttcatttatttatt--------------------------------------------------------------------------------------------------
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TGTGGAACCGTTGGTGGGGTTGGAGGGGGAGGCATTTTCGTTCCCATGCTCAATCTGATTCTTGGCTTTGATACTAAGTCTGCTGCTGCTCTTTCTAAATgtaattaacactttttcttatgcctatggtgttaatttct-tgattgtggttcctcaaaaattggttgaaatctgtgctcacatatgtgtcttttttttttgtgtgtgtagcactgctcatatataattgttggttgtggttggtgttttgagttgtgaaaaaagtttggttttggtgttattgacttgtttgttgtccag
upper sequence: Vv08s0007g04230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G07420.1 (Glycine max), 5'ss of exon 2
TTTGGAACGGTTGGTGGAGTCGGAGGAGGAGGCATTTTTGTTCCTATGCTTACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAATgtaaatcttctttatttgatctttttatctcactttctgcaat-tcaaaagccagatttt--ctttcccaaatttgaatctaatatcagttcatttatttatt
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TGTGGAACCGTTGGTGGGGTTGGAGGTGGAGGCATTTTCGTTCCCATGCTCAATCTGCTTCTTGGCTTTGATACTAAGTCTGCTGCTGCTCTTTCTAAATgtaataagcacttttctcttaagactacttttctggacatggtgttaatttcttgattatggtttctcaaaaattggttgaaatctgtggtcacatctgt---
upper sequence: Vv08s0007g04230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G37360.1 (Glycine max), 5'ss of exon 2
TTTGGAACGGTTGGTGGAGTCGGAGGAGGAGGCATTTTTGTTCCTATGCTTACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAATgtaaatcttctttatttgatctttttatctcactttctgcaattcaaaagccagattttctttcccaaatttgaatctaatatcagttcatttatttatt
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TTTGGAACCGTTGGAGGGGTAGGTGGGGGTGGCATTTTCGTTCCCATGCTCACTCTCATTGTTGGTTTTGATACCAAGTCAGCTGCTGCTCTTTCTAAATgtaatgattacttattttctctttc-attttattctttctatcacgttgttgtgacttattaggcctt-tttgcttttggttttg--tgacttgtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37183603|gb|CF602957.1|CF602957EST: TACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAAT GTATGATAATGGGGGCATCGACATCGTCAGTCTGGTATAATCTAAGAGTAA
genomic: TACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAATgtaaatcttc ... atgattgcagGTATGATAATGGGGGCATCGACATCGTCAGTCTGGTATAATCTAAGAGTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGGAACGGTTGGTGGAGTCGGAGGAGGAGGCATTTTTGTTCCTATGCTTACCTTGATTGTTGGGTTCGATACCAAATCTGCTGCTGCACTTTCTAAATgtaaatcttctttatttgatctttttatctcactttctgcaattcaaaagccagattttctttcccaaatttgaatctaatatcagttcatttatttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc