Sequence
atgc intronic sequence ATGC exonic sequenceTCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttattccatgtgtggtctataattacttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G07660.1 (Glycine max), 5'ss of exon 1
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttattccatgtgtggtctataattacttgatgtgt-ccctatgataaataatgcatattttatgc-tgttgttattttgtcataccgactagt
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TCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGgtcagatatttattcttcttttagcctgttattgatttccatttatcttctctcttatagtgtgcttcttatacatttttttatgacagtctat-gatgaa-
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G37610.1 (Glycine max), 5'ss of exon 2
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttat--tccatgtgtggtctataattac---------ttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt
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TCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGACGGGATTATATAAAATATTTTGCTTACAGACTACCTGAGgtcagatatttattatctttgaccattttaccttcacacctttattttgatatgcttatatgatcaatgctttagattgtgaagttatgaaattttatag-----------
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 2
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttatt-ccatgtgtggtctataattac-ttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt
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TCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGgtcagatatttattatctttaaccatttaccttcatgcctttattttgatatgcttattattgtatatgatgaatcctttagattgtgaagttatga--aat
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G37600.1 (Glycine max), 5'ss of exon 1
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttattccatgtgtggtctataattacttga---tgtgtccctatgat-aaataatgcatattttatgctgttgttattttgtcataccgactagt
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--------------------------------------ACAGTATTGTGAAGAACATTGGACGGGATTATATAAAATATTTTGCTTCCAGACTACCTGAGgtcagatatttattatctttaaccactttaccttcatacctttattttgatatgcttatatgatgaatcctttaga---ttgtgaagttatcaaaatgtatac-
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 1
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttattccatgtgtggtctataattacttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt
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ACCAAGTGATCAGAAGCTGCCAACACTGTACCTGTTAGACAGCATTGTGAAGAACATCGGAAGGGATTACATTAAGTACTTTGGTGCCAGGCTGCCTGAGgtttgg----tgctttgttgatagtc-atggttatagaatgtttttttcc--tagcaaattcatctctgat--caccctctttttacttctctgaag---
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S341_36V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgt---tagaattttattccatgtg-tggtctataattacttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt--
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TCCAAAGGACCAGAAGCTTCCATCTTTATACCTCCTTGATAGTATTGTGAAGAATATTGGAGGCGAGTATGTAAAATACTTTGCTGCACGACTTCCTGAGgtactcgcagatgcatgccgtttgattgtctcta--tgctagcggaaaaattatgct---taaggc-tccctcgttctgttaatattcggaactacaggtttctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719345|gb|FC068965.1|FC068965EST: AGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAG GTATTCTGCAAGGCATATAGACAAGTTGATCCTTCTATACATCCTGGTATG
genomic: AGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattt ... tttactctagGTATTCTGCAAGGCATATAGACAAGTTGATCCTTCTATACATCCTGGTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttattccatgtgtggtctataattacttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgataaa