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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatctgatttttttattatttctgctattccaacttgtgcaaattgtctgtttatcatttcttaaatgggcagtagaagcgtacaaatggaaata...

Basic information

species Vitis vinifera
transcript Vv08s0007g03250.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349822639|gb|FQ412903.1|FQ412903
EST:     TGTATCCTAAAGCGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|30253209|gb|CB970760.1|CB970760
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|351019188|gb|FQ429348.1|FQ429348
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGGGTATATTCTAGAAATTGCTG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|349829498|gb|FQ420030.1|FQ420030
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGGGTATATTCTAGAAATTGCTG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|110413628|gb|EC979423.1|EC979423
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG                         GTTTCAAAGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|28959489|gb|CB339745.1|CB339745
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCAG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|71855235|gb|DT004290.1|DT004290
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAGCCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
EST: gi|349811972|gb|FQ410769.1|FQ410769
EST:     TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG                         GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA
genomic: TGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatct ... tattatctagGTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTGgtactgatctgatttttttattatttctgctattccaacttgtgcaaattgtctgtttatcatttcttaaatgggcagtagaagcgtacaaatggaaata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa