1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGCTTCCAGTTTCTCTCCACAAAAAATTAGACTATGTCATGAAGCAATTCCAAACAGTCAGGGGGAAAAAATTGATCCCTCTTTCAGCTGAAAAATGTGgtagtggaggcttataactcttttcagttttacattacgtatgaaaaatacaataatgaacatgacatgtgctgttgatgattggggtggatttgattat...
species | Vitis vinifera |
transcript | Vv08s0007g02890.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAACAGTCAGGGGGAAAAAATTGATCCCTCTTTCAGCTGAAAAATGTG GCTTGTCGGATATCCTAGAAGCTGATGCAAAGCATATTTCAAAAATGGCTCEST: gi|71856055|gb|DT005110.1|DT005110
genomic: CCAAACAGTCAGGGGGAAAAAATTGATCCCTCTTTCAGCTGAAAAATGTGgtagtggagg ... gttgatgcagGCTTGTCGGATATCCTAGAAGCTGATGCAAAGCATATTTCAAAAATGGCTC
EST: CCAAACAGTCAGGGGGAAAAAATTGATCCCTCTTTCAGCTGAAAAATGTG GCTTGTCGGATATCCTAGAAGCTGATGCAAAGCATATTTCAAAAATGGCTC
genomic: CCAAACAGTCAGGGGGAAAAAATTGATCCCTCTTTCAGCTGAAAAATGTGgtagtggagg ... gttgatgcagGCTTGTCGGATATCCTAGAAGCTGATGCAAAGCATATTTCAAAAATGGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTTCCAGTTTCTCTCCACAAAAAATTAGACTATGTCATGAAGCAATTCCAAACAGTCAGGGGGAAAAAATTGATCCCTCTTTCAGCTGAAAAATGTGgtagtggaggcttataactcttttcagttttacattacgtatgaaaaatacaataatgaacatgacatgtgctgttgatgattggggtggatttgattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaca