Sequence
atgc intronic sequence ATGC exonic sequenceGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatgtctgtttcccatcatcatccccagtccacaccatacaggtcatgttgtttgccagtgggttgttcttgaccagctttcttctggttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02260.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G43040.1 (Glycine max), 5'ss of exon 2
-GCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatgtctgtttcccatcatcatccccagtccacaccatacaggtcatgttgtttgcc-agtgggttgttcttgaccagctttcttctggttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacag
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GGTTGATATAGTTTTGCGAGGATATGCTGGTTGGAATTCAAGGCGTGCTCTGCAGGTTCTGGATAAAATCTTTCCTAAggtatggtat------------tcaccatctgagtgcttctgttaataagaaatttccccttctgagtgaaatttgtttccctttcttaataaatgttaatttcttttaggg--------------------------------------
upper sequence: Vv08s0007g02260.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G18170.1 (Glycine max), 5'ss of exon 2
GCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatgtctgtttcccatcatc--atccccagtccacaccatacaggtcatgttgtttgccagtgggttgttcttgaccagctttcttctggttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacag
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GTTGATATTGATTTGCGAGGATATGCTGGTTGGAATTCAAGGCGTGCTGTGCAGGTTCTGGATAAAGTTTTTCCCAAGgtattcaccatctgagtgcttctgttcaataaaaaatctccccttcagagtgaaatttgttttcc-------cattcttaataaacgtt-----aatttcttttttgggtgg--------------------------------------
upper sequence: Vv08s0007g02260.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G43070.1 (Glycine max), 5'ss of exon 2
GCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatgtctgtttcccatcatcatccccagtccacaccatacaggtcatgttgtttgccagtgggttgttcttgaccagctttcttctggttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacag
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-CCGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCAAAGGtattaacaatctgagtgttacccccgttg--attcaaaatttcactttctttcttcattttgaatcttttgtcctt--tcatcgtgaat--gatag--ttattggtta---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373489|gb|EC937731.1|EC937731EST: GGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG GATGCTGCTGTGCAGCCATCTTTGGTGATAGTCTATTTTGGTGGTAACGAC
genomic: GGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatg ... taaaatacagGATGCTGCTGTGCAGCCATCTTTGGTGATAGTCTATTTTGGTGGTAACGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatgtctgtttcccatcatcatccccagtccacaccatacaggtcatgttgtttgccagtgggttgttcttgaccagctttcttctggttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacag
- - - - - - - - - - - - - - GGTGGA