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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCAAATATTGTTTACAAAGGGAAACTCGATGCTGACCGTTGGATCGCTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTTgttcgttgctttgctttacagtttcaattatgtgtgattgttcatcttagttgttctttcttagttttaattgatgcgatcggggtttag

Basic information

species Vitis vinifera
transcript Vv08s0007g01520.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409978|gb|CF215605.1|CF215605
EST:     CTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTT                         GAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAGATTAGCGAATTTG
genomic: CTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTTgttcgttgct ... cggggtttagGAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAGATTAGCGAATTTG
EST: gi|161709384|gb|FC059253.1|FC059253
EST:     CTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTT                         GAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAG
genomic: CTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTTgttcgttgct ... cggggtttagGAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAG
EST: gi|110687454|gb|EE064880.1|EE064880
EST:     CTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTT                         GAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAGATTAGCGAATTTG
genomic: CTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTTgttcgttgct ... cggggtttagGAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAGATTAGCGAATTTG