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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAAACTTCAAATTCTCACCAGCCAAGATCACTGTTGTTGGACTTCAAGATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAGgtactgctaatgagtttcatctgagcaccacctgcttctctctataattttttgttgatttgctaatttgcttcttagttccttattttctgtttag

Basic information

species Vitis vinifera
transcript Vv08s0007g01490.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546117|gb|CF514349.1|CF514349
EST:     GATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAG                         GGAGGAGGGTATCAAGAAAAGAAGCTCATCTTCAGCATGGTGCCATTCAAG
genomic: GATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAGgtactgctaa ... ttctgtttagGGAGGAGGGTATCAAGAAAAGAAGCTCATCTTCAGCATGGTGCCATTCAAG
EST: gi|34545122|gb|CF513354.1|CF513354
EST:     GATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAG                         GGAGGAGGGTATCAAGAAAAGAAGCTCATCTTCAGCATGGTGCCATTCAAG
genomic: GATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAGgtactgctaa ... ttctgtttagGGAGGAGGGTATCAAGAAAAGAAGCTCATCTTCAGCATGGTGCCATTCAAG
EST: gi|33406046|gb|CF211673.1|CF211673
EST:     GATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAG                         GGAGGAGGGTATCAAGAAAAGAAGCTCATCTTCAGCATGGTGCCATTCAAG
genomic: GATTGCCCAACCATTGCAATGCCACAAATCGTTTTGATCTTTTTGTTCAGgtactgctaa ... ttctgtttagGGAGGAGGGTATCAAGAAAAGAAGCTCATCTTCAGCATGGTGCCATTCAAG