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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGCCATTACTAATCTATGTGgtatgctatgtgtttattttttgaagtgtttggatgatgggaattataaatttacaacattggcttttttccttctaatagttactgctctttcttttcccgatttccag

Basic information

species Vitis vinifera
transcript Vv08s0007g01380.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G41330.1 (Glycine max), 5'ss of exon 2
GAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGCCATTACTAATCTATGTGgtatgctatgtgtttatttt------ttgaagtgtttggat--------gatgggaattataaatttacaacattggct-tttttccttctaatagttactgctc-tttcttttcccgatttccag
|| || ||| | |||||| | ||||||||||| |||||||| |||||||| |||||    |||||  |||||||||| |||||||| || |||||||||||||||| |  ||   | ||       ||   ||||||  ||         || ||  |  | |||||    |||| ||| || ||   | | || |||  || || ||||||| |   |||| |||
GAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTCGCTACAGCCTTGGCTATCTCAAATGCCATAACCAATCTATGTGgtatgcaaaatgcacacttgaagcagttactgtgtttttattttttattaattggtgtggtgaattttattcatttgctattcttgactttgattgttgttgttcatttctttgctgaatttgcag

upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 2
GAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGCCATTACTAATCTATGTGgtatgc------------------------tatgtgtttattt---------tttgaagtgtttgg---atgatgggaattataaatttacaacattggcttttttccttctaatagttactgctctttcttttcccgatt-tccag
|| || ||| | |||||| | ||||||||||| |||||||| || ||||| |||||    ||||| |||||||| || |||||||| || ||||||||||||||||                        | ||| |||||||         |||  | |  ||||   | | |||   |  | |||||   | | ||   || || | | | || || |  |||||||| ||| | || | |  ||
GAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGCGGAAATGGGGTCACTACAGCCCTGGCTATTTCAAATGCCATAACCAATCTATGTGgtatgcaaaatgcacaattgaagcagttactgtgtttttatttggttttttctttttattaattggtgcaagttggttgtggtgaatttt--agagtgctattcttgcctgtgattgtgatggctctttcctttgctgaatatgtag

upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G16610.2 (Glycine max), 5'ss of exon 1
GAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGCCATTACTAATCTATGTGgtatg---ctatgtgtttattttttgaagtg---tttggatgatgggaa-ttataaat-ttacaacattggctttt---ttccttctaatagttactgctctttc-ttttcccgatttccag
||||| ||  | |||||| | ||||||||||| ||||||||  ||||||| || ||     ||||  || |||| ||||||||||| ||||||||||||||||||   | |||      ||| |||| |     ||    |  ||  || |||||| |  | |||   | |||  |   |    | |  |  ||  ||  |   | |||||   || |  ||
GAAAGGTTCGCAAAATTGTTACTTGGAGAAGATATGTCAGGTAGTGGAAATGGAGTCCCTGCAGCCTTGACTATATCCAATGCCATCACTAATCTATGTGgtatgtacccatgaagcagtttcttgatgcaggtttcatttagtgaaaaattataattactgcaattcttgctcctaaatctgatgttctgattgttgtccaaacattttctgaatctgtag

upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGCCATTACTAATCTATGTGgtatgctatgtgtttattttttgaagtgtttggatgatgggaat-tataaatttacaac-attggcttttttccttctaatagttactgctctttcttttcccgatttccag
||||||||||||||| |||||||||||||||| |||||||| | |||||| || || || |||||  | |||||||| || || || |||||||| |||||||||     |    |||  |   |    ||||  |||   | | | | ||| ||     || ||||    |   | |  |  ||   |                       
GAAAGATTTTCGAAACTGCTGCTTGGAGAAGATATGTCAGGTTCTGGAAATGGTGTCTGTACAGCTTTAGCTATCTCAAACGCAATCACTAATCTTTGTGgtatgtggaattggaattactcacatgaattggtggattatactctttgaatatattttgataggctcgactttgtgttttgcttgaag-----------------------