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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAAAAAAGTGTTGGTGAAGTGTCTGGTTATGAATGACAAATTGCTTGTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttattctcccccttttttaaaagtcgtcttcattttctttttctttttttcttttttcaaattggggtgtttcttttatttttcttttattattattattattatgattttcgaattggtttatctggttgaatttttcttgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g01340.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824491|gb|FQ413158.1|FQ413158
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110372149|gb|EC936298.1|EC936298
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110718881|gb|EE096218.1|EE096218
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110723305|gb|EE100463.1|EE100463
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110356854|gb|EC919981.1|EC919981
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|351023717|gb|FQ448268.1|FQ448268
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110688830|gb|EE067830.1|EE067830
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|352785766|gb|FQ475769.1|FQ475769
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110718248|gb|EE094865.1|EE094865
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|110731453|gb|EE105880.1|EE105880
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|37187578|gb|CF606931.1|CF606931
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|351025561|gb|FQ437049.1|FQ437049
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
EST: gi|349830477|gb|FQ416775.1|FQ416775
EST:     GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAA                         TGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT
genomic: GTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttatt ... tttcttgcagTGTTGAGGACTATGTCGCTGAAAATGGGGGTACCAATTATTCTGGGCAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCAAAAAAGTGTTGGTGAAGTGTCTGGTTATGAATGACAAATTGCTTGTTGCTGCTTTGGCCGATGGGGCTTCTGAGCCGATCCATCTTGAAATCAAgtgggttattctcccccttttttaaaagtcgtcttcattttctttttctttttttcttttttcaaattggggtgtttcttttatttttcttttattattattattattatgattttcgaattggtttatctggttgaatttttcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
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