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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAGGAGCTGGTTTTATTACAGAACTGCCCAAACCCACCAAAGAAATTAAAGCCAGGAAATTATTGGTATGATAAAGTATCTGGCCTTTGGGGAAAGgtgaatgtgattaccttcagacattttgttctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacag

Basic information

species Vitis vinifera
transcript Vv07s0255g00100.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G38890.1 (Glycine max), 5'ss of exon 3
TCAAGAGGAGCTGGTTTTATTACAGAACTGCCCAAACCCACCAAAGAAATTAAAGCCAGGAAATTATTGGTATGATAAAGTATCTGGCCTTTGGGGAAAGgtgaatgtgattaccttcagacattttgttctggtattttgtttcataattgttttgaatggaacttgatgcttgttcta-aattttacag
| | |||||  |||||   || ||||||||||| ||||| || |||||  | ||||||||||| |||||||||||||||||||||||||||||||| |||||  ||    |||  | ||    |  | |    |  |||||  |  | | |||| | | |     ||| || ||| | ||  |||| ||||
TTATGAGGAATTGGTTACGTTGCAGAACTGCCCCAACCCTCCGAAGAAGCTGAAGCCAGGAAACTATTGGTATGATAAAGTATCTGGCCTTTGGGGGAAGgt--attcatttaaatgcatttgtgatttgtatggtttttgaattttgagtgttattactacgg-ttgctgattggtttatgatttcacag

upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G06410.1 (Glycine max), 5'ss of exon 3
TCAAGAGGAGCTGGTTTTATTACAGAACTGCCCAAACCCACCAAAGAAATTAAAGCCAGGAAATTATTGGTATGATAAAGTATCTGGCCTTTGGGGAAAGgtgaatgtgattaccttcagacattttgttctggtat-tttgtttcataattgttttgaatggaact-----tgatgcttgttctaa--attttacag
| | |||||  ||||    || ||||| ||||| ||||| || |||||  | |||||||| |  ||||||||||||||||||||||| |||||||| |||||  || || |||| | ||    || || | |||| | | || |   | | | |||||  ||  |||     || || ||| | |||  |||| ||||
TTATGAGGAATTGGTAACTTTGCAGAATTGCCCCAACCCTCCCAAGAAGCTGAAGCCAGGGACCTATTGGTATGATAAAGTATCTGGTCTTTGGGGGAAGgt--atttgtttacatgcat---ttgtgatttggtttgtatggtgtttgagttttttgtgtgttactacggatgctgattggtttaatgatttcacag

upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAGGAGCTGGTTTTATTACAGAACTGCCCAAACCCACCAAAGAAATTAAAGCCAGGAAATTATTGGTATGATAAAGTATCTGGCCTTTGGGGAAAGgtgaatgtgattaccttcagacattttgt-tctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacag
 |  || |||||||||  | | ||||  ||  | || || || |||||  | || |||||  | ||||||||||||||||| ||||| ||||||||||||||||    || ||  | | |   |||||  | | || | ||  ||  || ||||||   ||  |  |  ||      |     || |||||
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgag---gaatatttactgttcttttgagttttgtgtcttagtttcta-ttgtttcttatatatatatatatgatgttggggttctacag