Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGTGACAAGAGGAGCTGGATGAGCTGTGCACAGCTCTGGAGCTGTAACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAGgtgaatttggaacttgtttgaaagaagaattacgatttattgggaatttaccgaatgggaattttgaattttgtttcttgatggcag

Basic information

species Vitis vinifera
transcript Vv07s0197g00060.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857215|gb|DT006270.1|DT006270
EST:     ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAG                         AGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGT
genomic: ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAGgtgaatttgg ... ttgatggcagAGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGT
EST: gi|161721793|gb|FC070496.1|FC070496
EST:     ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAG                         AGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGT
genomic: ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAGgtgaatttgg ... ttgatggcagAGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGT
EST: gi|161710638|gb|FC059392.1|FC059392
EST:     ACCGAAGCTCTGACAATAACA-TAAAAAATCAGTACTAGAATCCCAACAG                         AGAAATGAGGAAGATAATAACTCTGGGTCT
genomic: ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAGgtgaatttgg ... ttgatggcagAGAAATGAGGAAGATAATAACTCTGGGTCT
EST: gi|161712163|gb|FC061535.1|FC061535
EST:     ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAG                         AGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGT
genomic: ACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAGgtgaatttgg ... ttgatggcagAGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGT