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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattttattcagttgttggcattaaatatattttcgtgttattatctcttgtttaaaatttgtaatgtacgttattatc...

Basic information

species Vitis vinifera
transcript Vv07s0191g00060.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattttattcagttgttggcattaaatatattttcgtgttattatctcttgtttaaaatttgtaatgtacgttattatc--
||||| || ||||| ||  | || ||||| ||||| ||||| |||||||| |||||||||||||||| ||   |     |    |   |  | |  | || |     ||| ||  || |  ||| | ||  ||||    |    || |||      ||||  |    
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgtt--ctctcagatgctcttcgtagctgttgttaagacgat

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 1
TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattttattcagttgttggcattaaatatattttcgtgttattatctcttgtt--taaaatttgtaatgtacgttattatc----
||||| || |||| ||| || || || || ||||| |||||||| ||||||||||| ||||||||||||    |  |||     ||  |||  |||  || ||||  |||||| |  ||  || ||  ||  | || ||  |    || ||    |  | | | |      
TTCAACATCGCGAGTCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTgtaa----tcacttcactctttctttctttctttttttggtgttaaattt--ttgagtatttctacttgttcttcgtggtgttcgtgtgttgtgctttgagagaaa

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattttattcagttgttggcattaaatatattttcgtgttattatctcttgtttaaaatttgtaatgtacgtta--ttatc
||||| || |||||||| || || || || ||||| |||||||| ||||||||||| | ||||||||||  | ||   |    |||    ||||  | |  || | |||   ||  | ||| || |  | | || ||| |     ||  || | | |||   |||| 
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttc-tacttgttcttggtggtgt-tcgtgtgttgtgctttcaaagaaagttgatttatt

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattt-tattcagttgttggcattaaatatat--tttcgtgttatta--tctcttgtttaaaatttgtaatgtacgttattatc
|||||  |||||||||| || || || || ||||| |||||||| |||||||| |||||||||||||||||  || |||    | || ||  | |||| |  ||   | || |||| |  |     |||   |  ||| ||| ||    ||||||     |  | |||  
TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACTgtaagattttgcttc---tctgtttcatcttcattcatttttaatagatatttcgtgctaggttgccagatctattgattggtgtttgtatatatcactgtta--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110406936|gb|EC972523.1|EC972523
EST:     CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT                         GCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
genomic: CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatt ... tgtcatgcagGCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
EST: gi|351027768|gb|FQ446935.1|FQ446935
EST:     CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT                         GCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
genomic: CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatt ... tgtcatgcagGCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
EST: gi|32269925|gb|CD719084.1|CD719084
EST:     CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT                         GCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
genomic: CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatt ... tgtcatgcagGCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
EST: gi|110732898|gb|EE108585.1|EE108585
EST:     CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT                         GCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT
genomic: CCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatt ... tgtcatgcagGCGAGCATTTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACT