Sequence
atgc intronic sequence ATGC exonic sequenceTGATGGTAATTCCATGAAAGTGGCCGAGTTATTGTTCAAAAATGGATTCAAAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAGgtactcttccctatctttcttgtttttttttaaccgctgtttgtctattccatccatgcttgggtctcagtttcttcttgtagaactccattgaacctgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0151g00750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g66600.1 (Oryza sativa), 5'ss of exon 2
TGATGGTAATTCCATGAAAGTGGCCGAGTTATTGTTCAAAAATGGATTCAAAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAGgtactcttccctatctttcttgtttttttttaaccgctgtttgtctattccatccatgcttgggtctcagtttcttcttgtagaactccattgaacctgc
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TGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGgtttgttatgataccgtt---ggtctgaagtaata--tatttgttgaaagcaaacacaac-atatctca----ccatttctaaatctctatcttctcag-
upper sequence: Vv07s0151g00750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G48200.1 (Glycine max), 5'ss of exon 2
TGATGGTAATTCCATGAAAGTGGCCGAGTTATTGTTCAAAAATGGATTCAAAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAGgtactcttccctatctttcttgtttttttttaaccgctgtttgtctattccatccatgcttgggtctcagttt-cttcttgtaga-actccattgaacctgc--
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TGACGGTAATTCCATGAAAGTTGCCGAGGTACTGTTCAAGAATGGTTTCAAAGAGGCCTATGCAATCAGAGGTGGAGTTAGAGGCCAGCAAGGTTGGATGgta---tgaccattctcttctcttttcttttacttgtttgtttagcagaatgtgca-gaatgaacatctgtctacattctatacatgtttttcttcaccttaga
upper sequence: Vv07s0151g00750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G38180.1 (Glycine max), 5'ss of exon 2
TGATGGTAATTCCATGAAAGTGGCCGAGTTATTGTTCAAAAATGGATTCAAAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAGgtactcttccctatctttcttgtttttttttaaccgctgtttgtctattccatccatgcttgggtctcagttt-cttcttgtaga-actccattgaacctgc--
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TGACAGTAATTCTTTGAAAGTTGCTGAGTTACTATTCAAGAATGGTTTCAAAGAGGCCTATGCAATCAGAGGTGGAGTTAGAGGCCAGCAAGGTTGGATGgta---tgaccattctcttctcttttcttttacttgattgtttagcagaatgtgca-gaatgaacctctgtctacattctatacatatttttcttcaccttagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728770|gb|EE104627.1|EE104627EST: AAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAG GCAATTCAAGAAAACCTATTGCCACCGTCAGTACATATTTATCCTAAGAAG
genomic: AAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAGgtactcttcc ... atgtttgcagGCAATTCAAGAAAACCTATTGCCACCGTCAGTACATATTTATCCTAAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGGTAATTCCATGAAAGTGGCCGAGTTATTGTTCAAAAATGGATTCAAAGAGGCTTATGCAATCAGGGGTGGGATCAGAGGCAAGAATGGCTGGCAGgtactcttccctatctttcttgtttttttttaaccgctgtttgtctattccatccatgcttgggtctcagtttcttcttgtagaactccattgaacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA