1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTGATCAGGAAGAAATATCCAGGTTAATACCAATGGTTTCTCGCCGTCGCCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtctttcttttgtttgtaaaactagcatggccacacgtttatggtgagacatctggtcaatatcaccttattataggaactttactgaactgaaca...
species | Vitis vinifera |
transcript | Vv07s0151g00650.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|110686773|gb|EE064797.1|EE064797
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|110700228|gb|EE078024.1|EE078024
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|294966891|gb|GW839766.1|GW839766
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|110374525|gb|EC939343.1|EC939343
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|30256284|gb|CB972127.1|CB972127
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|110397256|gb|EC962986.1|EC962986
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|30253383|gb|CB970934.1|CB970934
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|34544630|gb|CF512862.1|CF512862
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|110702624|gb|EE078760.1|EE078760
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|110374716|gb|EC939639.1|EC939639
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACCEST: gi|34543204|gb|CF511436.1|CF511436
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
EST: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAG GTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
genomic: CCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtcttt ... gactctttagGTGTAATCGAGATACTGATAAACAGTGGAAGGCAAATTGATGCTGTTAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATCAGGAAGAAATATCCAGGTTAATACCAATGGTTTCTCGCCGTCGCCAAACAGCTGATTTATGTCGCTCCCTTGGGCTGTCAGAGAAAATGCCAGgttagtctttcttttgtttgtaaaactagcatggccacacgtttatggtgagacatctggtcaatatcaccttattataggaactttactgaactgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaac