1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCTCAAAAGCAACTTCAGTGCTACCAAAGTGTCATCATGGAAATAAAGGCAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaatttaaaatttgaatacttaaggttctgtttcggaaactgcaaaatttcatctgcttttttcgactcatattcagacaacatgtgccttagc...
species | Vitis vinifera |
transcript | Vv07s0151g00550.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCEST: gi|26265932|gb|CA816995.1|CA816995
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCEST: gi|110727233|gb|EE103760.1|EE103760
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCEST: gi|27581764|gb|CB004459.1|CB004459
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCEST: gi|28959679|gb|CB339840.1|CB339840
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCEST: gi|71887554|gb|DT036609.1|DT036609
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCEST: gi|26258595|gb|CA809658.1|CA809658
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
EST: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCT AGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
genomic: CAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaat ... cctttttcagAGAGTTTTTGAGTCAAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCAAAAGCAACTTCAGTGCTACCAAAGTGTCATCATGGAAATAAAGGCAGATGGAAAGGAAAGCTCCCTCATTCTGTTGAAACAAGGAGCTGAAGCTgtgagtcaatttaaaatttgaatacttaaggttctgtttcggaaactgcaaaatttcatctgcttttttcgactcatattcagacaacatgtgccttagc
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca