Sequence
atgc intronic sequence ATGC exonic sequenceCTTGATGGCTAACAAAAACGCTGAATTGCAGCGCCTTACTGGTATATACAAGAACATTCTGAAAAATGCTGGAGTCACATTAATTGAAGGCCGTGGAAAGgttggatatcattgtaaagccagattagaaataaacagaattcttctctgaaatgaattcatatttcatgctttttatgactgttgcttgaattttaatgattttatccgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os10g28000.1 (Oryza sativa), 5'ss of exon 1
CTTGATGGCTAACAAAAACGCTGAATTGCAGCGCCTTACTGGTATATACAAGAACATTCTGAAAAATGCTGGAGTCACATTAATTGAAGGCCGTGGAAAGgttggatatcattgtaaagccagattagaaataaacagaattcttctctgaaatgaattcatatttcatgctttttatgactgttgcttgaat-tttaatgattttatccgtag
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-CTGATGACCAACAAGAATTTAGAGTTGCAGCGCTTGGTGGGGGTTCAGACAAACATGCTAAAGAATTCTGGGGTCACTATAATTGAAGGCCGTGGAAAGgttgggacaaatttgtaaattgggttaagtttgcatatacagttttgttgaaa-ggatcaatgcagcaa------tgacagtgttgatatactacctgttcatattatgcag--
upper sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g06740.1 (Oryza sativa), 5'ss of exon 2
CTTGATGGCTAACAAAAACGCTGAATTGCAGCGCCTTACTGGTATATACAAGAACATTCTGAAAAATGCTGGAGTCACATTAATTGAAGGCCGTGGAAAGgttggatatcattgtaaagccagattagaaataaacagaattcttctctgaaatgaattcatatttcatgctttttatgactgttgcttgaattttaatgattttatccgtag
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TCTGATTGCCAACAAAAATACAGAGCTGCAGCGCCTTGTTGGCATTTACAAGAATATTTTAAACAACTCAGGAGTTACTCTAATTGAAGGCCGTGGAAAGgttgggtgatgttcgtaaatcaagttaaactttgaatagactgtttccctaaacaaatac-tatggtaaggt----gcagctgttgatgtaactttgtttacttagtacag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712070|gb|FC061442.1|FC061442EST: ATTAATTGAATGCCGTGGAAAG ATTGTGGACCCACACACAGTTGACGTGGATGGAAAACTATATACAGCAAGG
genomic: ATTAATTGAAGGCCGTGGAAAGgttggatatc ... ttatccgtagATTGTGGACCCACACACAGTTGACGTGGATGGAAAACTATATACAGCAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGATGGCTAACAAAAACGCTGAATTGCAGCGCCTTACTGGTATATACAAGAACATTCTGAAAAATGCTGGAGTCACATTAATTGAAGGCCGTGGAAAGgttggatatcattgtaaagccagattagaaataaacagaattcttctctgaaatgaattcatatttcatgctttttatgactgttgcttgaattttaatgattttatccgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG