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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGAGTGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtatttcagaatttttgttatgttttttgctggtgggtttagatgtgtatgatgattttggtgaagccctgtttgatgcatgatttttgtttgcaatag

Basic information

species Vitis vinifera
transcript Vv07s0129g00660.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G39780.1 (Glycine max), 5'ss of exon 2
CTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGAGTGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagta---tttcagaatttttgttatgttttttgctggtg------ggtttagatgtgtatgatgattttggtgaagccctgtttgatgc-atgatttttgtttgcaatag---------------
|||| || |||||||| ||||| ||| | |||||||| ||||||||||||  ||| ||||| |||  ||| |||||||| |||||||| |||||||||| ||  ||    ||       |||| || | |  ||  ||| |       |   ||   ||  |||   ||| |||||        ||||| |  |||| |||||||||                     
CTGGAACATCTGCTGGCGAGAGAAAGTTGATGCCAACAATTCATGAAGAGATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAACCAgtatgttagcttcttcttctttttttctttcattaactgatactaagtgacgtattagttgatggcaattatggtggtagtaactttgaagttatgaattttgtttgtttcctcctccgattgcgcag

upper sequence: Vv07s0129g00660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G05510.1 (Glycine max), 5'ss of exon 2
CTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGAGTGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtatttcagaatttttgttatgttttttgctggtgggtttagatgtgtatgatgattttggtgaagccctgtttgatgcatg-atttttgtttgcaatag---------------
|||| || ||||| || ||||| ||| | |||||||| |||||||||||   ||| ||||| |||  ||| |||||||| |||||||| |||||||||| ||  || |||       ||  ||      |    |  |   |   |     |||| || |  | ||     | |  || ||  ||| | |||||||||     |               
CTGGAACATCTGCCGGCGAGAGAAAGTTGATGCCAACCATTCATGAAGAAATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAACCAgtacgtgtttagcgtcattaattgctaagtgaagtattaattcatggcaattatggtggtggtagtagtaactt--ttaatttatgtacttttgtttgtttctgcctcggattgctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714657|gb|FC063892.1|FC063892
EST:     TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT                         TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
EST: gi|161713635|gb|FC062543.1|FC062543
EST:     TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT                         TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
EST: gi|161705588|gb|FC055767.1|FC055767
EST:     TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT                         TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
EST: gi|161715493|gb|FC069056.1|FC069056
EST:     TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT                         TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA