1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTGGGAGGGGGAAATACAGTGAAGTGTTCGAGGGCGTGCACTGCACCGACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccctcttttatattgacttgcagcttcttggaaatttatttattccaccagaatttcttgtttgttggtttgtttaacattttgagcttttcga...
species | Vitis vinifera |
transcript | Vv07s0129g00270.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AC-ATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|71883675|gb|DT032730.1|DT032730
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: AC-ATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|27586807|gb|CB009502.1|CB009502
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|27586429|gb|CB009124.1|CB009124
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|71883451|gb|DT032506.1|DT032506
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: AC-ATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|161717971|gb|FC069266.1|FC069266
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|33402558|gb|CF208185.1|CF208185
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|110717101|gb|EE092665.1|EE092665
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTEST: gi|110703175|gb|EE079801.1|EE079801
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
EST: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAG ATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
genomic: ACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccct ... ttaaatacagATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGGGAGGGGGAAATACAGTGAAGTGTTCGAGGGCGTGCACTGCACCGACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGgtgaggccctcttttatattgacttgcagcttcttggaaatttatttattccaccagaatttcttgtttgttggtttgtttaacattttgagcttttcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa