Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGgtgagcttcttctgaaatcaattatatctaatatttattatgttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcag

Basic information

species Vitis vinifera
transcript Vv07s0129g00110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G17450.1 (Glycine max), 5'ss of exon 2
GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGgtgagcttcttctgaaatcaatt--atatctaatatttattatgttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcag------------
|||||  | ||  |||| || |||||||||||||| ||||||||||||||||||||| || || ||| ||| ||| |   | |||||| | || |   || || | |  |     |     | |   |   || |    || |  ||             
GAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGgtaagtttattcagaa-tcattggaaaatctaaaaatt-tagagtaaatagtccatgtactt---gagtttgtatgtcatcatctaatcacaatttgttttgtga

upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G40130.2 (Glycine max), 5'ss of exon 2
GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGgtgagcttcttctgaaatcaatta--tatctaatatttattatgttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcag
||||| ||||| |||||  | |||||||||||||||||| |||||||||||||| || || |||||| ||| | | |||  || || |||| ||| | || || |     |    |   || ||| |                     
GAGAAGTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAAgtaagtttcttcagaa-ttatttaaatagcttatatatatga-gtcaatatgcttacttgtgatcacatccag--------------------

upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G05190.1 (Glycine max), 5'ss of exon 2
GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGgtgagcttcttctgaaatcaattatatctaatatttattatgtt-aaaacttaaaaggttctccaaatcgattcctcttgggatatttgcag
|||||  | ||  |||| || |||||||||||||||||| |||||||||||| |||| || |||||| |||     |||| || ||||  |  ||| || || | | |  | | |  |  | | |    |       | ||   |||
GAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAGgtaagtttcttcagaa-----ttatttc-aataccttatatatttaagaatcagtatgcttacttacttgtgatc-------acatcctcag

upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G22420.1 (Glycine max), 5'ss of exon 2
GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGgtgagcttcttctgaa--atcaattatatctaatatttattatgttaaaact---taaaaggttctccaaatcgattcctcttgggatatttgcag----
||||| || ||  |||| || |||||||||||||| |||||||| |||||||||||| || |||||  |||  ||     |     || |||||   |    |  |    ||   |  | |    |||     ||  |   |  ||||       
GAGAAGTTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAGTTTATCCAAGgtaagtttctttagaattattggaaaatctaaaaatttagagtaaatagtccatgtacttgagtttgtgtatcatcatctaatcacaattttgttatgta