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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCAGAAGTTTTCGACTCAAGGTCTTTTAGGAAAAGAAATTTGCTCTAGTTCTTTTATTAATGGAACCTTGGTGATATTCCGTTTAGCACCACGGgtatttggtacaacttgtctttattgctttgtaggataaagacttttcatatcatatggttcaattattgaattccaaattgttgcag

Basic information

species Vitis vinifera
transcript Vv07s0095g00620.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0095g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 17
AGTCAGAAGTTTTCGACTCAAGGTCTTTTAGGAAAAGAAATTTGCTCTAGTTCTTTTATTAATGGAACCTTGGTGATATTCCGTTTAGCACCACGGgtatttggtacaacttgtctttattgctttg-taggataaagacttttcatatcatatggttcaattattgaattccaaattgttgcag
        ||||||   ||||||||||||||| |||||||| || || ||| ||||| || |||||||  ||||||| || ||||| ||||||| |||||||| | |    | ||  | |   |||  |    || | | |||  || ||| ||  || |||| |   ||    | |||||||||
--------GTTTTCAGTTCAAGGTCTTTTAGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAGgtatttgttgctctctttcaatgtcattttaattttgtatataatttg-atttcaaat--tttaattttaacatat--atttgttgcag

upper sequence: Vv07s0095g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G19310.2 (Glycine max), 5'ss of exon 15
AGTCAGAAGTTTTCGACTCAAGGTCTTTTAGGAAAAGAAATTTGCTCTAGTTCTTTTATTAATGGAACCTTGGTGATATTCCGTTTAGCACCACGGgtatttggtacaacttgtctttattgctttgtaggataaagacttttcatatcatatggtt-caattattgaattccaaat-----tgttgcag
 |||  ||||||||   |||||||||||| || |||||||| || || ||| ||||| || ||||| |  ||||||| |||||||| ||||||| |||   |||| |    | |  || |   |||           | |||  |||| || || || ||||| || | ||  | ||     ||||||||
GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtgctttctttaattgtcatttta----------attttgtatataatttgatttcaatttttcattttaacatatatttgttgcag