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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgtttttttacttttttgaattgttatgttatggatctaagaaagcaaaagaataaaaaaaagatgatggcatgaccatttaaaggtttatgtttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g03150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 3
AAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgt---------------ttttttacttttttg-------aattgttatgttatg--gatcta--agaaagcaaaagaataaaaaaaagatgatggc--------atgaccatttaaaggtt-tatgtttcag
|||| ||| |||| ||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||  ||||||| |||| ||| |  |   ||||||               | |   ||| |||||       | || || |||  ||  | ||||    |  | || | |||  |    |||| ||| |        ||||| ||||      | | ||||||||
AAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagttattggcaatgtcaaactcttttgctgctacattttttgtgtcgtgatgttctactcaatggaaatataatttattctagataatgactagtaggaatgacaattttgcttctctgtgtttcag

upper sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 2
AAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgtt----tttttacttttttgaattgttatgttatgg-atctaagaaagcaaaagaataaaaaaa----agatgatggc--------atgaccatttaaaggtt-tatgtttcag
|||| ||| |||| ||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||  ||||||| |||| ||| |  |   ||||||     || ||     | ||| ||  | ||| |||   |   |   | | |||  ||||    |    |||| ||| |        ||||| ||||      | |  |||||||
AAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagttattggcaatgtgattt-ctgtgtcatgatgttctacttaacgaaaatataatttcattctagataatgaccagtaggaatgacaattttgcttctctgcgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718078|gb|FC068581.1|FC068581
EST:     GGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAG                         ATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
genomic: GGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgtttttttac ... tatgtttcagATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
EST: gi|161715089|gb|FC063332.1|FC063332
EST:     GGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAG                         ATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
genomic: GGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgtttttttac ... tatgtttcagATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
EST: gi|161718151|gb|FC065657.1|FC065657
EST:     GGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAG                         ATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
genomic: GGTGAGGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgtttttttac ... tatgtttcagATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
EST: gi|161713964|gb|FC063149.1|FC063149
EST:     GGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAG                         ATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG
genomic: GGTTGTTGAACATGGCCCACTCACGGACACCAAGATTACTAAAAGgtttttttac ... tatgtttcagATTTCCTATTGGATCTCGTGTTGTTGGAGCTTTCATCATGCCCTGTGGTAG