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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaagaattttttgtgtgtttgtttgttttttactgtatgattatcttcagggttttcatccatcttatattgttttgtattttgtgtgtgtatgattcag

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133769|gb|CB919108.1|CB919108
EST:     GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG                         AAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
EST: gi|351036166|gb|FQ464011.1|FQ464011
EST:     GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG                         AAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
EST: gi|161716956|gb|FC068141.1|FC068141
EST:     GTACATCAAAAAAG                         AAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
EST: gi|110719627|gb|EE094919.1|EE094919
EST:     GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCNNNNNNN                         NNGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
EST: gi|351044383|gb|FQ452935.1|FQ452935
EST:     GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG                         AAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
EST: gi|351045775|gb|FQ440960.1|FQ440960
EST:     GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG                         AAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
EST: gi|161709635|gb|FC058015.1|FC058015
EST:     GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG                         AAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA
genomic: GACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAGgtattcaaga ... tatgattcagAAGGTTGGGCAGGATAAGGATGTTATGGGAGAGGTTTACAAGACCCATGAA