Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCAAATGACGGGTACGGTACAGAAGCGGGAAATGAAGGAGCAGTTTCTTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatattttttgtattctttataggggttttgttggttttattgttgtatctggatttcatttagggacatagttcaatgtattggctgacactagca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G003157_T01 (Zea mays), 5'ss of exon 2
GCTGCAAATGACGGGTACGGTACAGAAGCGGGAAATGAAGGAGCAGTTTCTTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatattttttgtattctttataggggttttgttggtt--ttattgttgtatctggatttcatttagggacatagttcaatgtattggctgacactagca
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GCTGGAGCTTACTGGCACGGTGCAGAAGAGGGAGATGAAGGAGCAGTTTCTGGATAACATGGACCTGGAGAGGGAGAGAGGGATCACCATAAAATTGCAGgtaccgatacacaaagttgta-acatgtgaccggtcggttaattaagatcatttaacatctctatgtttatcaatggggcgaaactcttgaaatcaatagt-
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 2
GCTGCAAATGACGGGTACGGTACAGAAGCGGGAAATGAAGGAGCAGTTTCTTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatattttttgtattctttataggggttttgttggttttat-tgttgtatctggatttcatttagggacatagttcaatgtattggctgacactagca---
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GCTTCAGGTTACCGGCACGGTGCAGCAGCGAGAAATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGgttccgacctttt----cctaattcgttgttatcttaatcttacgcgagagattcggaatatgattttgaaaatccttttttctaaattaagatactctctaga
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 2
GCTGCAAATGACGGGTACGGTACAGAAGCGGGAAATGAAGGAGCAGTTTCTTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatattttttgtattctttataggggttttgttggttttattgttgtatctggatttcatttagggacatagttc----aatgtattggctgacactagca--------------------------------------
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GCTTCAGGTTACCGGCACGGTGCACCAGCGAGAGATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGgttcccatcttttcctaattccttattagcttatattatcttaatttcgtacgagag----attgggaaatatgattttgaaaatgcttttttcgatattaagatatttgtgaaagtatttgactaattttgatcatggcag
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGCAAATGACGGGTACGGTACAGAAGCGGGAAATGAAGGAGCAGTTTCTTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatatttt--ttgtattctttataggggttttg-ttggttttattgttgtatctggat--ttcatttagggacatagttcaatgtattggctgacactagca
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GCTTCAGGTGACTGGTACTGTTCAGAACAGAGATATGAAGGAGCAGTTTCTTGATAACATGGACTTAGAGAGAGAACGAGGCATCACTATCAAGCTTCAGgtttttctttcaatcgctttctctgcacaatcaaaaatcagtttcgataagattgctcaacggtctgatttgtaactttgcggtgtatgtttgtgtag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917805|gb|CN547134.1|CN547134EST: TTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCATACTACAG GCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTA
genomic: TTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatattt ... tttattgcagGCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCAAATGACGGGTACGGTACAGAAGCGGGAAATGAAGGAGCAGTTTCTTGATAACATGGATCTAGAGCGTGAAAGAGGAATCACAATCAAACTACAGgttcatattttttgtattctttataggggttttgttggttttattgttgtatctggatttcatttagggacatagttcaatgtattggctgacactagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaca