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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGACATTTGAAAGAAGTGGTGCTTCCTTCGGAAGGTGTACAACGTTTAGTATCAACAGATATGGATGAACTTCTAAGAATTGTTGTGGCGGACAAGAGgtggactaatggatactggctaaatagttaatattgccatcaatgtgcttgatcagaatggttactattgtgtctatttcatttctgcagtggtaaccttgctgatttacggtattatgttttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02970.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 1
TGAGACATTTGAAAGAAGTGGTGCTTCCTTCGGAAGGTGTACAACGTTTAGTATCAACAGATATGGATGAACTTCTAAGAATTGTTGTGGCGGACAAGAGgtggactaatggatactggctaaatagttaatattgc--catcaatgtgcttgatcagaatggttactattgtgtctatttcatttctgcagtggtaaccttgctgatttacg-------gtattatgttttcag
| || ||||| ||||||| |||||||| |||  | |  || |||  |||||||||||  ||||||||||||||||| ||||||||||  || ||||||||||  | || |||||     | || || | |  || ||  | | | | ||  | | |  | |  ||  | || |  |  | ||||  ||  | |  |||  || |   | ||         | |||| ||| ||||
TTAGGCATTTAAAAGAAGAGGTGCTTCTTTCACATGCCGTGCAAGATTTAGTATCAAAGGATATGGATGAACTTCTTAGAATTGTTGCAGCAGACAAGAGgtaaa-tattggattaaatcaaattactaagcatggcttctttactatgaataagctaactattttatttttttgcattatcatgactctaatattaaaatttcaactgtatatgattttggattacgttgtcag

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G16690.1 (Glycine max), 5'ss of exon 3
TGAGACATTTGAAAGAAGTGGTGCTTCCTTCGGAAGGTGTACAACGTTTAGTATCAACAGATATGGATGAACTTCTAAGAATTGTTGTGGCGGACAAGAGgtggactaatggatactggctaaatagttaatattgccatcaatgtgcttgatcagaatggttactattgtgtct-atttcatttctgcagtggtaaccttgctgatttacggtattatgttttcag-------------
| || ||||| ||||||| |||||||| ||| |  | ||| |||  |||||||||||  ||||||||||||||||| || |||||||  || ||||||||||  | || |||||       ||||    || |  | | ||  |    |  || | | |   || | |  ||| |    | |      |  | | ||  ||     |  || ||||  || |||  |             
TTAGGCATTTAAAAGAAGAGGTGCTTCTTTCTGTGGCTGTGCAAAATTTAGTATCAAAGGATATGGATGAACTTCTTAGGATTGTTGCAGCAGACAAGAGgtata-tattggat-taaatcaaattacaaagaacggcttctgtaccatcaat-aaactaactattttattgttttgcattaccatgactctagaaaatttaaatttcaactgtat-gtgattttggattatgttgtcag

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 2
TGAGACATTTGAAAGAAGTGGTGCTTCCTTCGGAAGGTGTACAACGTTTAGTATCAACAGATATGGATGAACTTCTAAGAATTGTTGTGGCGGACAAGAGgtggactaatggatactggctaaatagttaa---------tattgccatcaatgtgct--tgatcagaatggttactattgtgtctatttcatttctgcagtggtaaccttgctgatttacggtattatgttttcag
| || ||||| ||||||| |||||||| |||  | |  || |||  |||||||||||  ||||||||||||||||| || |||||||  || ||||||||||  | || |||||      |||||   |||           || | || |||  |||    ||   | || ||   |||      | |  | |  |  | |   |||  |      ||  || | |||||| ||||
TTAGGCATTTAAAAGAAGAGGTGCTTCTTTCACATGCCGTGCAAGATTTAGTATCAAAGGATATGGATGAACTTCTTAGGATTGTTGCAGCAGACAAGAGgtaaa-tattggat-taaattaaattcctaagcatggcttctttactatgaataagctatctattttattgttttgcattaccatgactctaatattaaaatttaaactgtatgagattttgg-actatgttgtcag

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 2
TGAGACATTTGAAAGAAGTGGTGCTTCCTTCGGAAGGTGTACAACGTTTAGTATCAACAGATATGGATGAACTTCTAAGAATTGTTGTGGCGGACAAGAGgtgg-actaatggatactggctaaatagttaatattgc---catcaatgtgcttgatcagaatggttactattgt-gtctatttca--tttctgcagtggtaaccttgctgatttacggtattatgttttcag
| |  ||||| ||||||| ||||||||| |  || | ||| |||  |||||||||||  ||||||||||| |||||||| |||||||  || ||||| ||||   |||| || ||       ||||   ||| |  |    | ||  | | | ||| | ||      |||||| | || ||       ||| |  | || ||| |||  ||   |   |  |||||||| |||
TTAAGCATTTAAAAGAAGAGGTGCTTCCATTAGAGGCTGTGCAAGATTTAGTATCAAAGGATATGGATGAGCTTCTAAGGATTGTTGCTGCAGACAAAAGgtaacactattgaat-taaatcaaattcctaacaaggggggcttctgttt-catgacctgaccaacaactattttagtttaccaggactttataaaatgataaactttatgtgattttgatttatgtttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718502|gb|FC069286.1|FC069286
EST:     GTGGCGGACAAGAG                         GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTG
genomic: GTGGCGGACAAGAGgtggactaat ... atgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTG