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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGGGAAAAGCAGCAGAAGGAAATTGAACATACAAGAGACTTAATAAGCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatggatctactgaatcagtgggtggtataatctagtaaattcctgttcatcacaggaaaaaaatagctaaatctttgtgttggtgagccatcaa...

Basic information

species Vitis vinifera
transcript Vv07s0031g01640.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01640.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G15200.1 (Glycine max), 5'ss of exon 2
AGCATGGGAAAAGCAGCAGAAGGAAATTGAACATACAAGAGACTTAATAAGCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatat---ggatctactgaatcagtgggtggtataatc--tagtaaattcctgttcatcacaggaaaaaaata-gctaaatctttgtgttggtgagccatcaa
 |||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||  || |||  |||||||||||||||||||| ||  ||||||| ||||||||| |   | || || |   |||   | |   |   |   |  | |||   | |  |||  |         || |||| | || | ||    |||        
TGCATGGGAGAAGCAGCAGAAAGAAATTGAGCATACAAGAGACTTGATAAGTAGATTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCTTCTGCTGAGAAGgtatatgtcaagaatatattttctcacaagtttaaagggttgttcatgaatggttttatatctaacatgtcctttatgctagagctctttgagcttgaag------

upper sequence: Vv07s0031g01640.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G39670.1 (Glycine max), 5'ss of exon 2
AGCATGGGAAAAGCAGCAGAAGGAAATTGAACATACAAGAGACTTAATAAGCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatat---ggatctactgaatca-gtgggtggtataatctagtaaattcctgttcatcacaggaaaaaaatagctaaatctttgtgttggtgagccatcaa
 |||||||| ||||||||||| |||||||| || ||||||||||| ||||| ||  || |||  |||||||||||||||||||| ||  |||| || ||||||||| |   | || || |    || ||     |  |  |  |  || ||  | |  |||  |           ||||   || | ||    |||        
TGCATGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAGAGACTTGATAAGTAGATTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCTTCTGCCGAGAAGgtatatgtcaagaatatattttcccaagtttaaagggttgttcatgaatttattttatatctaacatgtctttatgctagggctgtttgagcttgaagtg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32456240|gb|CD797414.1|CD797414
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456175|gb|CD797349.1|CD797349
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456206|gb|CD797380.1|CD797380
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456186|gb|CD797360.1|CD797360
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456230|gb|CD797404.1|CD797404
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456265|gb|CD797439.1|CD797439
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456221|gb|CD797395.1|CD797395
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456275|gb|CD797449.1|CD797449
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456261|gb|CD797435.1|CD797435
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456216|gb|CD797390.1|CD797390
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|30323856|gb|CD007118.1|CD007118
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456200|gb|CD797374.1|CD797374
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32269520|gb|CD718679.1|CD718679
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456177|gb|CD797351.1|CD797351
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456229|gb|CD797403.1|CD797403
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456176|gb|CD797350.1|CD797350
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|29785439|gb|CB342426.2|CB342426
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456234|gb|CD797408.1|CD797408
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456282|gb|CD797456.1|CD797456
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|30126973|gb|CB912312.1|CB912312
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456268|gb|CD797442.1|CD797442
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456239|gb|CD797413.1|CD797413
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456250|gb|CD797424.1|CD797424
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456207|gb|CD797381.1|CD797381
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456266|gb|CD797440.1|CD797440
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456267|gb|CD797441.1|CD797441
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456190|gb|CD797364.1|CD797364
EST:     GCAGGTTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
EST: gi|32456222|gb|CD797396.1|CD797396
EST:     GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAG                         AAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT
genomic: GCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatgg ... atgataacagAAACTTGAAAAACTTCAAGATGAGGAACAGATTGATAAGCCATTTCAACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATGGGAAAAGCAGCAGAAGGAAATTGAACATACAAGAGACTTAATAAGCAGGCTAAGTGGCGGAGCAAATTCTGGCCGTGCATCCACTGCTGAAAAGgtatatatggatctactgaatcagtgggtggtataatctagtaaattcctgttcatcacaggaaaaaaatagctaaatctttgtgttggtgagccatcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa