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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag

Basic information

species Vitis vinifera
transcript Vv07s0031g01410.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
||||| |||||||||||||||||||||||||||| || || || || |||||||||||||| ||||| || ||||||  ||| || || || || |||||||||| |          |||| ||  ||  | || |  | ||    |||| ||  ||    |||||||||     |||| |    |  | |||| | | |         |                        
AAGATGCTAACAATGTGCTGCAGAGTTGGGATCCCACTCTGGTCAATCCATGCACATGGTTCCATGTAACTTGTAACCCTGACAACAGCGTGATCAGAGTgtaagttt---------ttgacagaatt-atcatttttaggc----ttgtcaaaagt----aagaaatgtgatcattttgt---gtgttgactgatctattttcctttcgcag---------------------

upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
||||| ||||||||||  |||||||||||||||| || || || || ||||| |||||||| ||||| || |||||||| || || |||||||| |||||||||| | ||      |   | |||| |         |||  | |  | | ||  |||  || ||  |        |   || || | || |   | || ||                                
AAGATGCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTTAATCCATGTACATGGTTCCATGTTACGTGTAACAACGATAACAGTGTTATCAGAGTgtaagttgat------gaaaaaagctct---------catatattcgtatcaaaagtgttaatgatgttctcctactggttctaagtgtaccccctttcacag-------------------------------

upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttga-tagcttttgtgatgtacatgca-atgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
| |||||||| ||||| || || ||||||||||| || || || ||||| ||||| ||||||||||| || || || ||||| || |||||||| |||||||| | | |  |  || |  | ||  |||  | |   |  |||| || || |   || | | |  ||||       |||||  |  |||   |                                           
ATGATCCTAATAATGTTCTACAAAGTTGGGATCCCACTCTGGTCAACCCCTGCACTTGGTTTCATGTTACCTGCAATAATGACAACAGTGTTATCAGAGTgtaggttcaccttttcctccactatatttcatcagtgagttgcacatattctgtgtt-tcgtactgaaa-------gtttttcctcatttgcag------------------------------------------

upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaattt----cctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
 |||| | ||||||||  |||||||||||||| | || || || || ||||| ||||||||||| || || |||||||  || || |||||||| ||||||||||   ||       |||    |||    ||   | ||    |  ||||| |   || |||     ||||||      |||  ||                                                   
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctcc-ttctggttct-aaatgtccccactttcacag--------------------------------------------------

upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM5G870959_T01 (Zea mays), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
|||||   ||||| |||||||||||||||||||| || || || || ||||| |||||||| ||||| || ||||||  ||| || ||||| || ||| |||||| | ||    |   |  |   || |    || |  || ||   ||   ||| ||   |     |||     ||||   |                                                   
AAGATAACAACAACGTGCTGCAGAGTTGGGATCCAACTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGATAACAGTGTCATCAGACTgtaagttgatcaaatatcttgttcattctcccttggaggtgaaagactgaccatt-tgaatattgtctgtttcccttttgctag--------------------------------------------------

upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
  ||||| ||||||||  ||||||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||| || || ||||| ||||||||||||     | | ||   | ||  |  || | |        |      ||     ||  |  | |  | |     |||| |||||| |                                              
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaaagctttcttct-actaatcccactttttaaactttgacctcagcgtg----gttaccgacatttttgtttcttttgtcaaatacag--------------------------------------------

upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgt--ggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag
  ||||| || |||||  |||| || |||||||||||||| || || || || || |||||||| || || |||||||| || || |||||||||||||||| ||    | ||   | | ||| ||    |||   |  | |  |||| ||  || |            ||| |  | ||  |||                                                   
TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagt--gtctctctgcttatacctgacctgaccaatgttctttgtt-tagcttatttaatctctgtttgttgttgcttcttcag--------------------------------------------------