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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttcttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00920.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G14670.1 (Glycine max), 5'ss of exon 2
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttcttc----gttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggt--tggtgagatttgttgatttttttaaaa-tgatttttaattt-tgagaagtgggtcatgcattttatcag
||| ||||||||||| ||||| |||||||| |||||| | |||||||||||||| ||||| || || |||| |||||| ||     ||| |   |      | |  | | || |||            |   | | |||   |||| |    | |  | |  |||||   | |   |  || | || ||| |  ||    || ||  ||||
GGTAATGCTTGTGGGGTGGGGGGGAAACAATGGCTCAACCCTCACTGGTGGTGTTATTGCTAACCGAGAgttagtttcatcttcaattcctaatcattaacgtttta-atttatttcttcttcttcttattttttgtggctatggtaatggctataaaataatttaagggtaaccatgtatgtatgtgaattatgtttctcacttc-tcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G02210.2 (Glycine max), 5'ss of exon 2
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttcttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag
||| ||||||||||||||||| ||||||||||||||  | ||||| |||||||| ||||| ||  | |||| ||||||    |||||  |||   |   |   || |   |||| |  ||        | |||  ||  || |   | ||  | ||||    ||||||| | |                              
GGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCGGTGGTGTTATTGCTAACAGAGAgttagtttcgat-ttcttagcctctgtcttttggtatta--ttaagaggaaccttgtgttatttattta-tgggtcatttttgtatttt----atgatttctcag-----------------------------

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 2
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttcttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag
||| ||||||||||| ||||| |||||||| |||||| | ||||| |||||||| ||||| || || |||| |||||| || | ||  ||    ||  |    || ||  |||  |  |         | | ||| | || |    | |  | |||   |   ||||  |  || |||     ||  ||   | | | |    
GGTAATGCTTGTGGGGTGGGGTGGAAACAATGGCTCAACCCTCACCGGTGGTGTTATTGCTAACCGAGAgttagtttcatcttcctaaccaatattaacgttttaatttattattatta---------tttgtggctagtaatggctttaaaattta--agggtgatcatgtatgttg-----tgattctcacttctcag---

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttcttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag
||||||||||||||||| |||||||||||| || ||| ||||||| | |||||| ||||| ||    |||||||| | || | ||  | |||          ||| |    |   | ||         | | |  | ||  | ||| | | | |     ||||                                        
GGTTATGCTTGTGGGTTTGGGAGGAAACAATGGATCAACTCTCACCGCTGGTGTGATTGCGAACAAAGAgtgagtctttttgatcaagtcct--------tgatattaaaatttgataattttgtctttttgtaatcgg-aaaattggataaat-----aaaacag-------------------------------------

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttc---ttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag
|||||||||||| ||||||||||||||||| || ||| | || || | |||||| ||||| ||    |||||||||           |||    |||  |  |  |   | ||||   ||      |||| | | | || |                                                                 
GGTTATGCTTGTTGGTTGGGGAGGAAACAATGGATCAACACTAACCGCTGGTGTCATTGCTAACAAAGAgtgagttaaaaacaaacactttatatgcaatctttgactttggtttttgaatttggtaaaattatgttgtag-----------------------------------------------------------------

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G22240.2 (Arabidopsis thaliana), 5'ss of exon 2
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagttt---cttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag
|||||||||||| ||||||||||||||||| || ||| | || || | |||||| ||||| ||    |||||||||           |||    |||  |  |  |   | ||||   ||      |||| | | | || |                                                                 
GGTTATGCTTGTTGGTTGGGGAGGAAACAATGGATCAACACTAACCGCTGGTGTCATTGCTAACAAAGAgtgagttaaaaacaaacactttatatgcaatctttgactttggtttttgaatttggtaaaattatgttgtagag---------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30298421|gb|CB975215.1|CB975215
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110718211|gb|EE094788.1|EE094788
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|352786493|gb|FQ479102.1|FQ479102
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110729420|gb|EE105357.1|EE105357
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|18458339|gb|BM436617.1|BM436617
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110370782|gb|EC932929.1|EC932929
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|351028589|gb|FQ446262.1|FQ446262
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110699399|gb|EE076363.1|EE076363
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGTTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|352781953|gb|FQ469251.1|FQ469251
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|349823419|gb|FQ423230.1|FQ423230
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110711003|gb|EE087708.1|EE087708
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|351029253|gb|FQ435453.1|FQ435453
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110729394|gb|EE105310.1|EE105310
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|294966781|gb|GW837800.1|GW837800
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110710113|gb|EE086162.1|EE086162
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|349826736|gb|FQ418827.1|FQ418827
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|349830747|gb|FQ417045.1|FQ417045
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|351025075|gb|FQ433492.1|FQ433492
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|29786214|gb|CB343821.2|CB343821
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110728696|gb|EE104489.1|EE104489
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110686985|gb|EE063998.1|EE063998
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110698948|gb|EE077030.1|EE077030
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110699779|gb|EE077086.1|EE077086
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|38516563|gb|CF983738.1|CF983738
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110707916|gb|EE084861.1|EE084861
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|30296613|gb|CB973407.1|CB973407
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|110698025|gb|EE075563.1|EE075563
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
EST: gi|18459348|gb|BM437626.1|BM437626
EST:     GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGA                         GGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG
genomic: GGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttct ... attttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTATGCTTGTGGGTTGGGGAGGAAACAACGGCTCATCTCTCACTGGTGGTGTAATTGCCAATCGGGAgtgagtttcttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcag

- - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - -  TGGTGG