Sequence
atgc intronic sequence ATGC exonic sequenceAAGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCAATTGGACGAGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGgtactttgttattgtctattgcttaatcctgcttgattgtatttgaactgcaaacaagaatatcttattaattccccattgaaaatgattttgtgttgtttaatttttttttcctggctggccttatacatgatatcttcaacagatatgctgatgatgtcctatccttgtttcaatctgttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G39420.1 (Glycine max), 5'ss of exon 3
AAGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCAATTGGACGAGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGgtactttgttattgtctattgcttaatcctgcttgattgtatttgaactgcaaacaagaatatcttattaattccccattgaaaatgattttgtgttgtttaatttttttttcctggctggccttatacatgatatcttcaacagatatgctgatgatgtcctatccttgtttcaatctgttgtag
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AAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCTATAGGACGTGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGgtactct----tcatttcttactt--tcctctttaatta-accaaaattgcttcc-------ttttttttttctttgattattattggtcctgcag------------------------------------------------------------------------------------------
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G05830.1 (Glycine max), 5'ss of exon 2
AAGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCAATTGGACGAGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGgtactttgttattgtctattgcttaatcctgcttgattgtatttgaactgcaaacaagaatatcttattaattccccattgaaaatgattttgtgttgtttaatttttttttcctggctggccttatacatgatatcttcaacagatatgctgatgatgtcctatccttgtttcaatctgttgtag
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AAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCTATAGGACGTGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGgtattcttactttcttctttaattatccaaaattgcttcttttttttttttttgta-gtatagat-atgaacttttgaactgatgaggtttttttttaattattattattcacgctgcag------------------------------------------------------------------
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S358_6V6.1 (Physcomitrella patens), 5'ss of exon 2
AAGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCAATTGGACGAGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGgtactttgttattgtctattgcttaatcctgcttgat-tgtatttgaactgcaaacaagaatatcttattaattccccattgaaaatgattttgtgttgtttaatttttttttcctggctggccttatacatgatatcttcaacagatatgctgatgatgtcctatccttgtttcaatctgttgtag
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AAGCGGAGAAGGAGTTTAGAGTGGAAGTGGAAGCGATCGGACGCGTTCGACACAAGAATCTCGTGCGCTTGCTGGGGTACTGTGCGGAGGGTGCTCACAGgtgaat-gtcatcccttcttcct--gcccagtttgttgtgtggtggcgcagctccttgatgttctttgttga--cctcgtttctggtggctgt-tgcag----------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965685|gb|GW839140.1|GW839140EST: CATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAG GATGCTTGTGTATGAGTATGTAAATAATGGGAATTTGGAGCAGTGGCTTCA
genomic: CATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGgtactttgtt ... tctgttgtagGATGCTTGTGTATGAGTATGTAAATAATGGGAATTTGGAGCAGTGGCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCAATTGGACGAGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGgtactttgttattgtctattgcttaatcctgcttgattgtatttgaactgcaaacaagaatatcttattaattccccattgaaaatgattttgtgttgtttaatttttttttcctggctggccttatacatgatatcttcaacagatatgctgatgatgtcctatccttgtttcaatctgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA