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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatgagattcattcaacctctgtgtctgaattcatactggattaatgggatcaataggatgatggttttaatggagcttaagaattaatgatgacag

Basic information

species Vitis vinifera
transcript Vv07s0031g00350.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185325|gb|CF604678.1|CF604678
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|71859221|gb|DT008276.1|DT008276
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|37185179|gb|CF604532.1|CF604532
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|71857191|gb|DT006246.1|DT006246
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|71858580|gb|DT007635.1|DT007635
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|352785883|gb|FQ475886.1|FQ475886
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCAGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|30128852|gb|CB914191.1|CB914191
EST:     GAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|110728674|gb|EE104447.1|EE104447
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|71855811|gb|DT004866.1|DT004866
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|110701151|gb|EE078431.1|EE078431
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|37189880|gb|CF609229.1|CF609229
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|71856551|gb|DT005606.1|DT005606
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|29782008|gb|CB346952.2|CB346952
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: gi|30124789|gb|CB910128.1|CB910128
EST:     GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG                         GAACATCATGACGACCTCAGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATATACTTGAGACCAGCGTTTATCCCAGAGAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatgagattcattcaacctctgtgtctgaattcatactggattaatgggatcaataggatgatggttttaatggagcttaagaattaatgatgacag

- - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC