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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctataaccttcttaattttaaacttgtgatgatcatattttgtgctgcttttgctctttgttattgggatcatatccttagtttttgaactaaattcatttctatttcttag

Basic information

species Vitis vinifera
transcript Vv07s0031g00030.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G05620.1 (Glycine max), 5'ss of exon 2
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgta--tcctataaccttcttaattttaaact--tgtgatgatcatattttgtgctgcttttgct--ctttgttattgggatcatatccttagtttttgaactaaa-ttcatttctatttcttag--------
|||||||||||||||| |||| || ||||| || || ||||| ||||| |||   ||||||||||||||||||||||| || ||||| ||||| |||||||||  |   |||   || ||   || ||| |  ||||   |   |   || |      |||  |    || ||||  |||| | |||| |  |  |   | |||  || | || | | | ||          
ACTCCTTTTCTACTGGGTGGTCCTATTCACACTTACAATGAGAAGACAAATATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAGgtaggtttaatatttttttttcattcaaaatgttgtggcaaatgttggttattaattctttaatggtgtttttatcaggattacatccatgttgctaatagtaagctttaattttgtctgttttacttttag

upper sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G39640.1 (Glycine max), 5'ss of exon 2
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgta----tcctataaccttcttaattt-taaacttgtgatgatcatattttgtgctgcttttgct--ctttgttattgggatcatatccttagtttttgaactaaattca---tttctatttc----ttag
|||||||||||||||| |||| || ||||| || || ||||||||||| |||   ||||||||||||||||||||||| || ||||| ||||| |||| ||||    |  ||||   || |  |||   ||  ||||||  |   |   || |       ||  |    || ||||  |||| | ||||||  |  |   | |||  | |   ||||| |||     ||||
ACTCCTTTTCTACTGGGTGGTTCTATTCACACTTACAATGAGGAGACAAATATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaatatatttttttccattcacaatgttgtgacaaatgttggttattaattcattaatggtgtttttatcaggattacatccttgttgctaatagtaagcttaaattttctgttttacttttag

upper sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G20940.1 (Glycine max), 5'ss of exon 2
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctataaccttc-ttaattttaaac-ttgtgatga--tcata-ttttgtgctgctt---ttgctctttg------ttattgggatcatatcctta--gtttttgaactaaattcatttctatttcttag--------
|||||| ||||||||| |||| || ||| | || || |||||||||||||||   |||||||| |||||||||||| | || || || | |||||||||||||  |||  | |||| ||     |||   |||| ||    ||||  ||||||   ||||       | ||||      |||     || | ||| ||   | |  ||    | |||   || ||||| ||          
ACTCCTCTTCTACTGGGTGGTCCTATTCTCACTTACAATGAGGAGACAGATATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaacatcttcattgggcataattattgtcatagactcatggttttgtatggcttggtccattttttggtgttcttaacataattacatctttgttgctaatggtaaagatttggttttatttattttacttttag

upper sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G18430.2 (Glycine max), 5'ss of exon 2
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctataaccttcttaattttaaact--tgtgat-gatcatattttgtg-ctgcttttgctctttgttattgggatcatatccttagtttttgaactaaa--ttcatttctatttcttag--------
|||||| ||||||||| |||| || ||| | || || |||||||||||||||   || ||||| |||||||||||| | || || || | |||||||||||||  |||  |  ||| |  |   ||| |  ||| || | |  | || | || ||   |    | |||| | ||   | |||||| ||  |  |     ||||  ||   || | ||| ||          
ACTCCTCTTCTACTGGGTGGTCCTATTCTCACTTACAATGAGGAGACAGATATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaacattttcattctgcaaaattattgtcataggttgtgttgtatggcttggtccattatttggtgttcttaacatatctttgttgctaatggtaaagatttggttttgtttgttttacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687065|gb|EE064148.1|EE064148
EST:     AATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTTGGAAA-CAG                         CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCA
genomic: AATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTT-GGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCA
EST: gi|110684805|gb|EE062504.1|EE062504
EST:     TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAG                         CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
genomic: TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
EST: gi|27583432|gb|CB006127.1|CB006127
EST:     TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAG                         CGGTATGGTGGAA
genomic: TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAA
EST: gi|30304103|gb|CB980897.1|CB980897
EST:     TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAG                         CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
genomic: TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
EST: gi|110374573|gb|EC939425.1|EC939425
EST:     TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAG                         CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
genomic: TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
EST: gi|110726472|gb|EE102283.1|EE102283
EST:     TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAG                         CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
genomic: TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCAT
EST: gi|294964241|gb|GW838044.1|GW838044
EST:     TAATGCACATGATCAAATACAAATATGTCCCTTTCTCCCTTGGGAAACAG                         CGGTATGGTGGAAAGAGGAC
genomic: TAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctata ... tatttcttagCGGTATGGTGGAAAGAGGAC